Scaffold Ga0207644_10000376

Overview

Basic Information

• Taxon OID: 3300025931
• Scaffold ID: Ga0207644_10000376
• Source Dataset Name: Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 29113
• Total Scaffold Genes: 50
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 37 (74.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan, Kellogg Biological Station
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F025065	Metagenome	203	N
F031549	Metagenome / Metatranscriptome	182	Y
F039688	Metagenome	163	Y
F095638	Metagenome	105	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0207644_1000037632	F025065	AGGAGG	MTPKQHFRSLQIRLEIAEFGMGMPLDRERVKELREQVEQARKDAELDTMTSDGTEP
Ga0207644_1000037638	F039688	GGAG	MKGYVIMAKENYPGASIKEICRCNGNAQDIRNALADYTVTGSQGTRIYKFNHVEILELSARKPKEERAQMKKPHKNIRCIPASEEPKIIANLQTVFAQIDAMRAGNGEQTAPQGQAAQDRPALSQRKSEAEQP
Ga0207644_1000037642	F095638	N/A	MGGSMTSHHAPHDHDYDGRPPVGWQDDDVLLERLCRCHPERIPDELRARFQTDYMRARAPLVAAALSLPAA
Ga0207644_1000037647	F031549	GGTGG	MTDTYSTMPDDETTEGPQPPQEEASEPGEGKKQSQEAANYREGNPQRSCGLCGHFDSKSHSCDVVEGDISPFGFSDLYLRQDNPFREGEKEGFQGGKKVAAIAPAVGPPGLMAIGRQSYGGE