Scaffold Ga0207701_10272144

Overview

Basic Information

• Taxon OID: 3300025930
• Scaffold ID: Ga0207701_10272144
• Source Dataset Name: Switchgrass rhizosphere bulk soil microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1475
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: Kellogg Biological Station, Michigan, USA
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F030581	Metagenome / Metatranscriptome	185	N
F069142	Metagenome	124	Y
F077585	Metagenome	117	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207701_102721441	F030581	N/A	MVSRFTIMVAKFLHIPDWAAVYVIWAAWIAVVIIIGIIVMLWR
Ga0207701_102721443	F069142	N/A	VKLTDAQRPHLEELLRDRPQWIKEKILADIAAEERRDDEDDNPRAGLSAYTLACLESELGIM
Ga0207701_102721444	F077585	AGGA	MARRLQEQTWVELRRLFVSGWSLGQLAKRFSIPKGTLCVKAAKERWSSERIEGQTLHDNEITFSDDPRLAEIQALVRDCKRAALEAEARTAKALALKAAKVVETIEINDLEGITQAQTYRSNLWPSVSPSIKPALDAAQRGERLVVSEETKKYVERLKTRM