NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207700_11135531

Scaffold Ga0207700_11135531


Overview

Basic Information
Taxon OID3300025928 Open in IMG/M
Scaffold IDGa0207700_11135531 Open in IMG/M
Source Dataset NameCorn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)698
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameUSA: Michigan: Kellogg Biological Station
CoordinatesLat. (o)42.4774Long. (o)-85.451Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F035419Metagenome / Metatranscriptome172Y
F070403Metagenome / Metatranscriptome123N

Sequences

Protein IDFamilyRBSSequence
Ga0207700_111355311F035419GGAMTDMRCVACGAEMHLIAVAPDKTMMVPGYEEHTFECSGCHDHVRRLVFTPRAIGPLTSERMRLPPAGLQIQDKGVTAEGASARAVRAGPPIKAMYVFGMLIVIALAGAMITSIQAPKGPVGDQGPPGPKGPQGDAGPPGTASGIRIVRSNCDETTCAVK
Ga0207700_111355312F070403N/AEQSPRFYMAVNLKAAALLGVSLSDVFVARANEVIE

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