Scaffold Ga0207700_10224824

Overview

Basic Information

• Taxon OID: 3300025928
• Scaffold ID: Ga0207700_10224824
• Source Dataset Name: Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1593
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan: Kellogg Biological Station
• Coordinates
  • Lat. (^o): 42.4774
  • Long. (^o): -85.451

Associated Families

Family	Category	Number of Sequences	3D Structure?
F031594	Metagenome	182	Y
F035917	Metagenome	171	Y
F045919	Metagenome	152	Y
F077695	Metagenome	117	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207700_102248242	F045919	N/A	MTQPGQLYDWTCSACSLDWVKRATGLVTPSDIYSSRESTVYEIGYPNNINPTYGLMNADGSALQAVLEMYGQESSQSWLDFDTTYELAQGTAGMMSGAKWYHWVGIRGVDAGCIWVANSAPGYKGVYDHVSRDDFARLGGFSVVWLV
Ga0207700_102248243	F077695	GGA	MTDYNVGPGVAQAIADNGDEARSDERYVIMDEGSKVSLTLGRDAQYWYYEADNRVNRLPF
Ga0207700_102248244	F035917	GGAGG	MTDTLFQFKVVYVDPGDGLIVGMEPSGGAVGNAHKVAVIHDQAEYDVLMRTDPAYLSDDKAHILAAPDHT
Ga0207700_102248245	F031594	GGAGG	MSVHPVTFNADGSIDVVYDEMGHSGTIPAAEVAWGTKMDGSHDHNFIILTCPDGCGATSTWPVGGGADATMGQQMFVNKVTSEGCACGQIQPTDADTLGESHIRLQVNRMDGPGRWALG