Scaffold Ga0207687_10210999

Overview

Basic Information

• Taxon OID: 3300025927
• Scaffold ID: Ga0207687_10210999
• Source Dataset Name: Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1523
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: Michigan, USA
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012170	Metagenome / Metatranscriptome	283	Y
F077127	Metagenome / Metatranscriptome	117	Y
F089248	Metagenome / Metatranscriptome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207687_102109993	F077127	N/A	MLNWIWIPVLYVLAFGLFGWLGGIAAAGDAIARWGRETAERRRVVSPSS
Ga0207687_102109994	F012170	GGAGG	MSSATTPAPLLRTGPKGNLICMATRTPLRDYERSRPEPSHGLLERAEEWVEETSLAPDNEPEEGVPWHAVALLLTALALLIAVEITLAFGIAKLVTGHAY
Ga0207687_102109995	F089248	N/A	GVATAAAAPKRFRASQQLCESNSGTFSTKANSSFFAPFYKKQGVLWTCNSYGGGSTASQAFVQSCASDGGQASTTLDSGFATCWKNQPL