Scaffold Ga0207659

Basic Information
Taxon OID	3300025926 Open in IMG/M
Scaffold ID	Ga0207659_10000002 Open in IMG/M
Source Dataset Name	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300025926 Open in IMG/M

Scaffold ID

Ga0207659_10000002 Open in IMG/M

Source Dataset Name

Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	619441
Total Scaffold Genes	572 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	371 (64.86%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

619441

Total Scaffold Genes

572 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

371 (64.86%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (75.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: IMG/M)

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Ecosystem

Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location Name	USA: Michigan, Kellogg Biological Station
Coordinates	Lat. (^o)	42.3948	Long. (^o)	-85.3738	Alt. (m)	Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

USA: Michigan, Kellogg Biological Station

Coordinates

Lat. (^o)

42.3948

Long. (^o)

-85.3738

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001519	Metagenome / Metatranscriptome	679	Y
F068102	Metagenome	125	Y
F081525	Metagenome	114	Y
F101835	Metagenome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207659_10000002184	F101835	GGA	MKCAHEGNVLRAAAEDRWSEALRGHVGECADCAAAAAAAPWMSSFARMSDREHRLPDPSIVWLKAQLMQGVADVARISRPITIAQLMAYFAVAAGWAALLTWKWHAVQAWLHSFTPTGLVQNAARSESLSISFLTIVFVLASTTVMLALHTILAEE
Ga0207659_10000002254	F081525	GAGG	MSISRLTAVAVLLLGAQVASGAQCVNRFVATRQGVRHVVTLLTGKLTFQEAQQLAKAIQAKQSPPLEWVDDSGKSIAKQSGMLEVVRPMPVGCDGKTSGVVMIVNFATASAPAKKMNLKLNADTTVAFEEQGK
Ga0207659_1000000248	F068102	GGA	MRSRPSQLLFVLAALLFACGRPQPLTAEKAQAIINESSYKREPIYAEVPQKVWWSPRAPKDDYDEKALRTLRNLERAGLVTITATESPDSATYIAKVTKKGFPILGTAPSYRGPVYRAQIAEKHYDGIRNFVRHPTQPTVGHAELIWHYDNPTPYYTMFETKIDKPLQKPFASHVSFWYGKHEWRFEVNIKKTQPAA
Ga0207659_100000027	F001519	N/A	MTLVNSLCAEISVFQGVGETTGLVVERAAIRGKRGLCKSMRDLAIKSRVLGDGYYYIPIDLWPKGKEPVVVHKHDWTVISSIPRTSRATKKRAGK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0207659_10000002

Overview

Ecosystem & Geography

Associated Families

Sequences