Scaffold Ga0207650_10001391

Overview

Basic Information

• Taxon OID: 3300025925
• Scaffold ID: Ga0207650_10001391
• Source Dataset Name: Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 17456
• Total Scaffold Genes: 39
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 29 (74.36%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan, Kellogg Biological Station
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020730	Metagenome	222	Y
F025065	Metagenome	203	N
F085876	Metagenome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207650_1000139110	F085876	N/A	MTNLPMHSLRQHHYPRLRGYEVGADGEVTVHLCLGLPCCGLDLLIEHPASMTALELYQIAGEFVQMQQRVKQLPAFQSCTLPPS
Ga0207650_1000139115	F020730	GGA	MDSPRAIAARMPHRRGLGEQALDPAAESELGRMRIRGEVSEPEETAGYVYARMWRGYVSTLDAPRTPGEGQGRAMACSECSDPSSRKYCACDLRKRIYLEAANALASTICGAGPLVHAVVILDRSCRYEDLPMLKLGLTALSIHYGLERPLTNHRKRAYRNASSKAVAPVHET
Ga0207650_1000139125	F025065	GGGGG	MTPKQHFRRLQLRLEIAEFGMGMPLDRERVKELREQVEQARKDAELDAMTSDGVE