Scaffold Ga0207650_10000028

Overview

Basic Information

• Taxon OID: 3300025925
• Scaffold ID: Ga0207650_10000028
• Source Dataset Name: Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 236867
• Total Scaffold Genes: 202
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 141 (69.80%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan, Kellogg Biological Station
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001223	Metagenome	743	Y
F002250	Metagenome / Metatranscriptome	578	Y
F003994	Metagenome	458	Y
F005931	Metagenome	386	Y
F007997	Metagenome	341	Y
F011793	Metagenome	287	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207650_10000028153	F002250	AGGAG	MYSAPIILPLDWTGRIYVLEDEKGQVIGTGSREVCETLMYMMRAGLSRASENAQVNARSNVRAAITI
Ga0207650_10000028178	F005931	GAGG	MINQKKTSEFIETSLVYLLSAAVAVGAFVLVWLVSLLLGSSPT
Ga0207650_1000002846	F001223	AGGAG	MKRFITVKSLILALLLAIIPVSASERPFASSGNGVATFITDGGGNVVGANLMLSGHGTHLGAFSGTGKIDFVPDPNDPNIVIVPGEITYVAADGDRLPTVIENGRMDLRTGIATGDMVFQNGTGRFAGVTGKAAIVVEQNFITGAYTFTLVGKINY
Ga0207650_1000002892	F003994	AGGAG	MSQSRRERGQNFLVQCSWCGSKIRDDKKEETHAVCLKCFYQILSNHLRAQKRTAYGEFVSDR
Ga0207650_1000002893	F007997	N/A	MRIRIERKHFSLKLALAAACVCVSAVSTFASSAVVIKPEVSRSHREELIKRLRVITGWNNLKFDDNGSLRLGDTQTSRGSESARILLKEAIAGPNVIVLEDASSRTDVAFCRVVRGRWIRDESNKPPAFVVLIDFTDFQQLSGDAEARAAFDAGWGLLHEIDHVVKDSEDARDAKAVGECEDHINRMRLEVGLPVRVDYFFSRAYLNADSNFNARYVRLSFEREAKRYWLVWDATTVGGLHGDSQRALVR
Ga0207650_1000002894	F011793	GGAGG	MSNWRKFAKRSVVLFCMLLAVSAAARSQTRENNRTLDEYDRTLNVMKNDAKAATERRRNLFPQINEDFQRIQMIHNEIVRMLQPDKGLNYDRLADLTGDMKKRSARLRENLALPQPEKTNTPPTQPETIDDVHLKKTIADLHDVIVTFVANPLFKNLGVVDAKVVDAAGENLVDIIDLSEKIKREAKLLSKPAKD