Scaffold Ga0207650

Basic Information
Taxon OID	3300025925 Open in IMG/M
Scaffold ID	Ga0207650_10000006 Open in IMG/M
Source Dataset Name	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300025925 Open in IMG/M

Scaffold ID

Ga0207650_10000006 Open in IMG/M

Source Dataset Name

Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	544730
Total Scaffold Genes	446 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	323 (72.42%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (100.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

544730

Total Scaffold Genes

446 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

323 (72.42%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (100.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: IMG/M)

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Ecosystem

Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location Name	USA: Michigan, Kellogg Biological Station
Coordinates	Lat. (^o)	42.3948	Long. (^o)	-85.3738	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Michigan, Kellogg Biological Station

Coordinates

Lat. (^o)

42.3948

Long. (^o)

-85.3738

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F003284	Metagenome	496	Y
F014665	Metagenome	261	Y
F024411	Metagenome	206	Y
F035269	Metagenome	172	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207650_10000006148	F035269	AGG	MMRPEKERTISYRVTEEEWNEIEKRAATVQESPHRWARSAMFEKLHRNDELTRVDRFLFLHLVRAQYLITQGFQMLADDTLTNEEWKKLRVNAKHKVSELADSALASYARKDAERV
Ga0207650_10000006384	F003284	GGAG	MYLRTILFSMLVLFCAGSALAQRPGPEFWRKVGCEPLEPRTKLEAIDDRHSTVVIKGFTRITTVEVRGVRVDAIEMRELGNVARAKGLVVILRESGGDRPEDNRAFVDYEEIEPLLNAIDAIGRVDESATKLVGFEARYKTQGDFEIGVFRQTRSGAAVILTTGICDRATATLSLDDLAKVRALIQEAKARLDEIR
Ga0207650_1000000664	F014665	AGGAG	MFQIKFKNSLLTLLALVAFALFAAPAYSQDKVFVTNTTSEPVPTVAQGTTKVTGTVLIGNTAAAPALVRDVNAASATHLGRKASEMVSLSGLFNANGEIFFLRTLPDGTATSFTIPAGKVLIITDVNWQIEFGNPGTVARLLLRIENLANPSLIRNVHNSVLTLNSAGVNGVNERLAAGIVVSSAAKITANLNTPTGALGGLFLIGYLAPEE
Ga0207650_1000000678	F024411	AGGAG	MCPICMTNAVLVVAGATSGAGVLGFVAVKVRALRRHRREPRTAQLDPKKSKQ

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0207650_10000006

Overview

Ecosystem & Geography

Associated Families

Sequences