Scaffold Ga0207681_10066147

Overview

Basic Information

• Taxon OID: 3300025923
• Scaffold ID: Ga0207681_10066147
• Source Dataset Name: Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2501
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan, Kellogg Biological Station
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F025065	Metagenome	203	N
F034607	Metagenome	174	Y
F051995	Metagenome / Metatranscriptome	143	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0207681_100661471	F025065	AGGA	MTPKQHFRALQIRLEIAEFGMGMPLDRERVKELREQVEQARKDAELDTMTSDGVE
Ga0207681_100661472	F051995	GGAG	MTDYDPERVDLRIESRQGKLAANAEAIERWQRKLFRAANELQKLVAQRKRLLNPSKGKLVYKGENITGIGGGAVDGMNDEIPL
Ga0207681_100661476	F034607	AGGAGG	MSQKQLRNDLLDRIKDRHFTWWNDSMELYKMAGLRPSQFGNDALTVLTYQIVWMLQHYEVDLDAFIKI