Scaffold Ga0207646_10008669

Overview

Basic Information

• Taxon OID: 3300025922
• Scaffold ID: Ga0207646_10008669
• Source Dataset Name: Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10156
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (72.73%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan: Kellogg Biological Station
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000259	Metagenome / Metatranscriptome	1441	Y
F061763	Metagenome	131	Y
F088603	Metagenome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207646_1000866914	F061763	N/A	MNSPFVLAVDARAVELALEDYLSHPDEGGGELLRFARVHRVLPLWTDWVGCIALRPTGQLVFVAWDDPEKVEPVGAAGDHDRRMVHAARAEGSRRFPSIAGLAPVRDASAQVCPSCKGSAKLAALPDNVVCECGGLGWVPF
Ga0207646_1000866916	F088603	GAGG	MRLKLAGLSLLKESEWLCPNVHELSFHGTALGGRVARSLSAIR
Ga0207646_1000866918	F000259	GGA	VAPPNKRLKLAGGDRSKGSGVLCADARELTFNCTAPCGRVARSLSAIR