Metagenome Family F088603

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F088603
Family Type	Metagenome
Number of Sequences	109
Average Sequence Length	45 residues
Representative Sequence	PNMRLKLAGLSFLRESEWLCPGGHGTSSTASCAGGLAARSLSAIR
Number of Associated Samples	76
Number of Associated Scaffolds	109

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	43.12 %
% of genes near scaffold ends (potentially truncated)	58.72 %
% of genes from short scaffolds (< 2000 bps)	74.31 %
Associated GOLD sequencing projects	71
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.14

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (62.385 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (26.605 % of family members)
Environment Ontology (ENVO)	Unclassified (43.119 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (52.294 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Fibrous	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 0.00% β-sheet: 0.00% Coil/Unstructured: 100.00%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.14
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.14
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 109 Family Scaffolds
PF12681	Glyoxalase_2	2.75
PF07045	DUF1330	2.75
PF09932	DUF2164	1.83
PF13649	Methyltransf_25	1.83
PF13419	HAD_2	1.83
PF08378	NERD	0.92
PF03144	GTP_EFTU_D2	0.92
PF08734	GYD	0.92
PF12697	Abhydrolase_6	0.92
PF07883	Cupin_2	0.92
PF16216	GxGYxYP_N	0.92
PF03772	Competence	0.92
PF01872	RibD_C	0.92
PF00484	Pro_CA	0.92
PF04893	Yip1	0.92
PF10012	DUF2255	0.92
PF14534	DUF4440	0.92
PF08592	Anthrone_oxy	0.92
PF03706	LPG_synthase_TM	0.92
PF09413	DUF2007	0.92
PF11042	DUF2750	0.92
PF04191	PEMT	0.92
PF07715	Plug	0.92
PF01243	Putative_PNPOx	0.92
PF07681	DoxX	0.92
PF00583	Acetyltransf_1	0.92
PF13392	HNH_3	0.92

COG ID	Name	Functional Category	% Frequency in 109 Family Scaffolds
COG5470	Uncharacterized conserved protein, DUF1330 family	Function unknown [S]	2.75
COG0262	Dihydrofolate reductase	Coenzyme transport and metabolism [H]	0.92
COG0288	Carbonic anhydrase	Inorganic ion transport and metabolism [P]	0.92
COG0392	Predicted membrane flippase AglD2/YbhN, UPF0104 family	Cell wall/membrane/envelope biogenesis [M]	0.92
COG0658	DNA uptake channel protein ComEC, N-terminal domain	Intracellular trafficking, secretion, and vesicular transport [U]	0.92
COG1985	Pyrimidine reductase, riboflavin biosynthesis	Coenzyme transport and metabolism [H]	0.92
COG2259	Uncharacterized membrane protein YphA, DoxX/SURF4 family	Function unknown [S]	0.92
COG4270	Uncharacterized membrane protein	Function unknown [S]	0.92
COG4274	Uncharacterized conserved protein, contains GYD domain	Function unknown [S]	0.92

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	62.39 %
Unclassified	root	N/A	37.61 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	62.39 %
Unclassified	root	N/A	37.61 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	62.39 %
Unclassified	root	N/A	37.61 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	37.61 %
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	22.02 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	11.93 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	2.75 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	1.83 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	37.61 %
Gemmatimonadetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	22.02 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	2.75 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	2.75 %
Cyanobacteria/Melainabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group	0.92 %
unclassified Terrabacteria group	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → unclassified Terrabacteria group	0.92 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	0.92 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	0.92 %
Planctomycetes	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	37.61 %
unclassified Gemmatimonadetes	no rank	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes	18.35 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2.75 %
Terrabacteria group bacterium ANGP1	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → unclassified Terrabacteria group → Terrabacteria group bacterium ANGP1	0.92 %
Cyanobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	0.92 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.92 %
Gemmatimonadetes	class	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes	0.92 %
Pseudomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales	0.92 %
Chromatiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales	0.92 %
Planctomycetia	class	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia	0.92 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	37.61 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	17.43 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2.75 %
Gemmatimonadales	order	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales	0.92 %
Gemmatimonadetes bacterium 13_1_40CM_2_60_3	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium 13_1_40CM_2_60_3	0.92 %
unclassified Chromatiales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → unclassified Chromatiales	0.92 %
Myxococcales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	0.92 %
Planctomycetales	order	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales	0.92 %
Nostocales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales	0.92 %
Pseudomonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae	0.92 %
Terrabacteria group bacterium ANGP1	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → unclassified Terrabacteria group → Terrabacteria group bacterium ANGP1	0.92 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	37.61 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	17.43 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2.75 %
unclassified Gemmatimonadales	no rank	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales	0.92 %
Chromatiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → unclassified Chromatiales → Chromatiales bacterium	0.92 %
Planctomycetaceae	family	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae	0.92 %
Pseudomonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas	0.92 %
Nostocaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales → Nostocaceae	0.92 %
Cystobacterineae	suborder	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae	0.92 %
Gemmatimonadetes bacterium 13_1_40CM_2_60_3	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium 13_1_40CM_2_60_3	0.92 %
Terrabacteria group bacterium ANGP1	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → unclassified Terrabacteria group → Terrabacteria group bacterium ANGP1	0.92 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	37.61 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	17.43 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2.75 %
Gemmatimonadales bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	0.92 %
Nostoc	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales → Nostocaceae → Nostoc	0.92 %
unclassified Planctomycetaceae	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → unclassified Planctomycetaceae	0.92 %
Pseudomonas stutzeri group	species group	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas → Pseudomonas stutzeri group	0.92 %
Chromatiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → unclassified Chromatiales → Chromatiales bacterium	0.92 %
Cystobacterineae	suborder	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae	0.92 %
Gemmatimonadetes bacterium 13_1_40CM_2_60_3	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium 13_1_40CM_2_60_3	0.92 %
Terrabacteria group bacterium ANGP1	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → unclassified Terrabacteria group → Terrabacteria group bacterium ANGP1	0.92 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	37.61 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	17.43 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2.75 %
Pseudomonas stutzeri subgroup	species subgroup	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas → Pseudomonas stutzeri group → Pseudomonas stutzeri subgroup	0.92 %
Planctomycetaceae bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → unclassified Planctomycetaceae → Planctomycetaceae bacterium	0.92 %
unclassified Nostoc	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales → Nostocaceae → Nostoc → unclassified Nostoc	0.92 %
Gemmatimonadales bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	0.92 %
Chromatiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → unclassified Chromatiales → Chromatiales bacterium	0.92 %
Cystobacterineae	suborder	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae	0.92 %
Gemmatimonadetes bacterium 13_1_40CM_2_60_3	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium 13_1_40CM_2_60_3	0.92 %
Terrabacteria group bacterium ANGP1	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → unclassified Terrabacteria group → Terrabacteria group bacterium ANGP1	0.92 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	37.61 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	17.43 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2.75 %
Nostoc sp. XA010	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales → Nostocaceae → Nostoc → unclassified Nostoc → Nostoc sp. XA010	0.92 %
Pseudomonas stutzeri	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas → Pseudomonas stutzeri group → Pseudomonas stutzeri subgroup → Pseudomonas stutzeri	0.92 %
Planctomycetaceae bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → unclassified Planctomycetaceae → Planctomycetaceae bacterium	0.92 %
Gemmatimonadales bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	0.92 %
Chromatiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → unclassified Chromatiales → Chromatiales bacterium	0.92 %
Cystobacterineae	suborder	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae	0.92 %
Gemmatimonadetes bacterium 13_1_40CM_2_60_3	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium 13_1_40CM_2_60_3	0.92 %
Terrabacteria group bacterium ANGP1	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → unclassified Terrabacteria group → Terrabacteria group bacterium ANGP1	0.92 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	0.92 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300002558\|JGI25385J37094_10110437	Not Available	799	Open in IMG/M
3300002558\|JGI25385J37094_10149499	Not Available	629	Open in IMG/M
3300005177\|Ga0066690_10945264	Not Available	546	Open in IMG/M
3300005178\|Ga0066688_10359635	Not Available	943	Open in IMG/M
3300005180\|Ga0066685_10548007	All Organisms → cellular organisms → Bacteria	798	Open in IMG/M
3300005180\|Ga0066685_10710695	Not Available	689	Open in IMG/M
3300005406\|Ga0070703_10306755	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas → Pseudomonas stutzeri group → Pseudomonas stutzeri subgroup → Pseudomonas stutzeri	663	Open in IMG/M
3300005444\|Ga0070694_101787532	Not Available	524	Open in IMG/M
3300005445\|Ga0070708_101032254	All Organisms → cellular organisms → Bacteria	771	Open in IMG/M
3300005445\|Ga0070708_101175077	All Organisms → cellular organisms → Bacteria → Proteobacteria	718	Open in IMG/M
3300005445\|Ga0070708_101763126	Not Available	575	Open in IMG/M
3300005450\|Ga0066682_10368683	Not Available	923	Open in IMG/M
3300005451\|Ga0066681_10378214	Not Available	871	Open in IMG/M
3300005467\|Ga0070706_100125698	All Organisms → cellular organisms → Bacteria → Proteobacteria	2391	Open in IMG/M
3300005467\|Ga0070706_100143215	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	2231	Open in IMG/M
3300005467\|Ga0070706_100422995	All Organisms → cellular organisms → Bacteria	1240	Open in IMG/M
3300005467\|Ga0070706_100792223	All Organisms → cellular organisms → Bacteria	877	Open in IMG/M
3300005471\|Ga0070698_101245481	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	694	Open in IMG/M
3300005518\|Ga0070699_100172217	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	1918	Open in IMG/M
3300005518\|Ga0070699_101510966	Not Available	616	Open in IMG/M
3300005536\|Ga0070697_100186624	Not Available	1759	Open in IMG/M
3300005536\|Ga0070697_101643246	Not Available	574	Open in IMG/M
3300005540\|Ga0066697_10004210	All Organisms → cellular organisms → Bacteria	6804	Open in IMG/M
3300005545\|Ga0070695_100272344	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	1241	Open in IMG/M
3300005546\|Ga0070696_100105722	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	2022	Open in IMG/M
3300005546\|Ga0070696_100114573	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	1944	Open in IMG/M
3300005553\|Ga0066695_10147793	All Organisms → cellular organisms → Bacteria	1462	Open in IMG/M
3300005553\|Ga0066695_10315131	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	985	Open in IMG/M
3300005555\|Ga0066692_10027119	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	2988	Open in IMG/M
3300005555\|Ga0066692_10630869	Not Available	670	Open in IMG/M
3300005568\|Ga0066703_10287170	Not Available	996	Open in IMG/M
3300005586\|Ga0066691_10151044	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	1336	Open in IMG/M
3300005586\|Ga0066691_10202710	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	1156	Open in IMG/M
3300005586\|Ga0066691_10956108	Not Available	504	Open in IMG/M
3300006031\|Ga0066651_10597917	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	586	Open in IMG/M
3300006034\|Ga0066656_10393461	Not Available	897	Open in IMG/M
3300006034\|Ga0066656_10480138	Not Available	810	Open in IMG/M
3300006796\|Ga0066665_10259962	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	1378	Open in IMG/M
3300006797\|Ga0066659_10007441	All Organisms → cellular organisms → Bacteria	5661	Open in IMG/M
3300006797\|Ga0066659_11027586	Not Available	689	Open in IMG/M
3300006852\|Ga0075433_10216209	All Organisms → cellular organisms → Bacteria → Proteobacteria	1703	Open in IMG/M
3300006854\|Ga0075425_100113711	All Organisms → cellular organisms → Bacteria → Proteobacteria	3087	Open in IMG/M
3300006903\|Ga0075426_10881435	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	675	Open in IMG/M
3300009012\|Ga0066710_101206816	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales → Nostocaceae → Nostoc → unclassified Nostoc → Nostoc sp. XA010	1172	Open in IMG/M
3300009038\|Ga0099829_10052679	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	3021	Open in IMG/M
3300009088\|Ga0099830_10103215	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → unclassified Planctomycetaceae → Planctomycetaceae bacterium	2131	Open in IMG/M
3300009137\|Ga0066709_100401669	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1901	Open in IMG/M
3300009147\|Ga0114129_10109102	All Organisms → cellular organisms → Bacteria	3820	Open in IMG/M
3300009176\|Ga0105242_11917027	All Organisms → cellular organisms → Bacteria	633	Open in IMG/M
3300010301\|Ga0134070_10013873	All Organisms → cellular organisms → Bacteria → Proteobacteria	2566	Open in IMG/M
3300010323\|Ga0134086_10148399	All Organisms → cellular organisms → Bacteria	855	Open in IMG/M
3300010325\|Ga0134064_10418817	Not Available	539	Open in IMG/M
3300010329\|Ga0134111_10021050	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	2199	Open in IMG/M
3300010329\|Ga0134111_10365112	Not Available	612	Open in IMG/M
3300010333\|Ga0134080_10112538	All Organisms → cellular organisms → Bacteria	1129	Open in IMG/M
3300010336\|Ga0134071_10135251	Not Available	1192	Open in IMG/M
3300010396\|Ga0134126_12094904	Not Available	618	Open in IMG/M
3300011269\|Ga0137392_10143356	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	1923	Open in IMG/M
3300012198\|Ga0137364_10041007	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	3029	Open in IMG/M
3300012198\|Ga0137364_10276972	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → unclassified Chromatiales → Chromatiales bacterium	1242	Open in IMG/M
3300012199\|Ga0137383_10202468	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	1455	Open in IMG/M
3300012199\|Ga0137383_10541483	Not Available	852	Open in IMG/M
3300012199\|Ga0137383_10601786	Not Available	804	Open in IMG/M
3300012206\|Ga0137380_10155325	Not Available	2087	Open in IMG/M
3300012207\|Ga0137381_10582212	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	975	Open in IMG/M
3300012208\|Ga0137376_11051747	All Organisms → cellular organisms → Bacteria	697	Open in IMG/M
3300012208\|Ga0137376_11104216	Not Available	678	Open in IMG/M
3300012210\|Ga0137378_11040516	Not Available	733	Open in IMG/M
3300012211\|Ga0137377_10210318	All Organisms → cellular organisms → Bacteria → Terrabacteria group → unclassified Terrabacteria group → Terrabacteria group bacterium ANGP1	1868	Open in IMG/M
3300012211\|Ga0137377_10342533	All Organisms → cellular organisms → Bacteria	1431	Open in IMG/M
3300012211\|Ga0137377_10488493	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	1170	Open in IMG/M
3300012211\|Ga0137377_10707308	Not Available	942	Open in IMG/M
3300012285\|Ga0137370_10518481	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae	731	Open in IMG/M
3300012349\|Ga0137387_10179256	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1517	Open in IMG/M
3300012356\|Ga0137371_10964913	Not Available	647	Open in IMG/M
3300012357\|Ga0137384_10718728	Not Available	811	Open in IMG/M
3300012357\|Ga0137384_10751101	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	791	Open in IMG/M
3300012359\|Ga0137385_11070491	Not Available	664	Open in IMG/M
3300012515\|Ga0157338_1070918	All Organisms → cellular organisms → Bacteria	544	Open in IMG/M
3300012917\|Ga0137395_10040420	All Organisms → cellular organisms → Bacteria → Proteobacteria	2879	Open in IMG/M
3300012917\|Ga0137395_10436874	Not Available	939	Open in IMG/M
3300012972\|Ga0134077_10516565	All Organisms → cellular organisms → Bacteria	531	Open in IMG/M
3300012976\|Ga0134076_10001195	All Organisms → cellular organisms → Bacteria	7555	Open in IMG/M
3300014157\|Ga0134078_10205260	Not Available	806	Open in IMG/M
3300015053\|Ga0137405_1023935	All Organisms → cellular organisms → Bacteria	1130	Open in IMG/M
3300015264\|Ga0137403_10432914	Not Available	1192	Open in IMG/M
3300017654\|Ga0134069_1008296	All Organisms → cellular organisms → Bacteria	2962	Open in IMG/M
3300017654\|Ga0134069_1337724	Not Available	540	Open in IMG/M
3300017659\|Ga0134083_10089045	Not Available	1206	Open in IMG/M
3300018468\|Ga0066662_12991479	Not Available	502	Open in IMG/M
3300019789\|Ga0137408_1238709	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	1166	Open in IMG/M
3300020004\|Ga0193755_1000532	All Organisms → cellular organisms → Bacteria	11075	Open in IMG/M
3300025885\|Ga0207653_10330848	Not Available	593	Open in IMG/M
3300025910\|Ga0207684_10063997	All Organisms → cellular organisms → Bacteria → Proteobacteria	3122	Open in IMG/M
3300025922\|Ga0207646_10008669	All Organisms → cellular organisms → Bacteria	10156	Open in IMG/M
3300025922\|Ga0207646_10016025	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	7046	Open in IMG/M
3300025922\|Ga0207646_10351572	All Organisms → cellular organisms → Bacteria	1332	Open in IMG/M
3300026296\|Ga0209235_1035147	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium 13_1_40CM_2_60_3	2548	Open in IMG/M
3300026310\|Ga0209239_1031789	All Organisms → cellular organisms → Bacteria	2503	Open in IMG/M
3300026310\|Ga0209239_1042054	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	2101	Open in IMG/M
3300026326\|Ga0209801_1008126	All Organisms → cellular organisms → Bacteria → Proteobacteria	5576	Open in IMG/M
3300026329\|Ga0209375_1001123	All Organisms → cellular organisms → Bacteria	20722	Open in IMG/M
3300026329\|Ga0209375_1310920	Not Available	515	Open in IMG/M
3300026538\|Ga0209056_10026451	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	5561	Open in IMG/M
3300026538\|Ga0209056_10240779	Not Available	1292	Open in IMG/M
3300027903\|Ga0209488_10034957	All Organisms → cellular organisms → Bacteria	3670	Open in IMG/M
3300031753\|Ga0307477_10121728	All Organisms → cellular organisms → Bacteria → Proteobacteria	1819	Open in IMG/M
3300032180\|Ga0307471_100323549	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	1640	Open in IMG/M
3300032180\|Ga0307471_102756454	Not Available	624	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	94.50%
Host-Associated	Host-Associated	5.50%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	94.50%
Plants	Host-Associated → Plants	5.50%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	94.50%
Rhizosphere	Host-Associated → Plants → Rhizosphere	4.59%
Rhizoplane	Host-Associated → Plants → Rhizoplane	0.92%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	74.31%
Loam	Environmental → Terrestrial → Soil → Loam	20.18%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	4.59%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	0.92%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	40.37%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	31.19%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	20.18%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	4.59%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	2.75%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	0.92%

Habitat	Taxonomy	Distribution
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	26.61%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	23.85%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	20.18%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	11.93%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	7.34%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	3.67%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	2.75%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.92%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.92%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Rhizosphere	0.92%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.92%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300002558	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_1_40cm	Environmental	Open in IMG/M
3300005177	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_139	Environmental	Open in IMG/M
3300005178	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_137	Environmental	Open in IMG/M
3300005180	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_134	Environmental	Open in IMG/M
3300005406	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-1 metaG	Environmental	Open in IMG/M
3300005444	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG	Environmental	Open in IMG/M
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental	Open in IMG/M
3300005450	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_131	Environmental	Open in IMG/M
3300005451	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_130	Environmental	Open in IMG/M
3300005467	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG	Environmental	Open in IMG/M
3300005471	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG	Environmental	Open in IMG/M
3300005518	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG	Environmental	Open in IMG/M
3300005536	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG	Environmental	Open in IMG/M
3300005540	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_146	Environmental	Open in IMG/M
3300005545	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG	Environmental	Open in IMG/M
3300005546	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG	Environmental	Open in IMG/M
3300005553	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_144	Environmental	Open in IMG/M
3300005555	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_141	Environmental	Open in IMG/M
3300005568	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_152	Environmental	Open in IMG/M
3300005586	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_140	Environmental	Open in IMG/M
3300006031	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Angelo_100	Environmental	Open in IMG/M
3300006034	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_105	Environmental	Open in IMG/M
3300006796	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114	Environmental	Open in IMG/M
3300006797	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_108	Environmental	Open in IMG/M
3300006852	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2	Host-Associated	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006903	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD5	Host-Associated	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009038	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG	Environmental	Open in IMG/M
3300009088	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG	Environmental	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009176	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG	Host-Associated	Open in IMG/M
3300010301	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_2_09082015	Environmental	Open in IMG/M
3300010323	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_40cm_2_24_1 metaG	Environmental	Open in IMG/M
3300010325	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_20cm_2_0_1 metaG	Environmental	Open in IMG/M
3300010329	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_2_11112015	Environmental	Open in IMG/M
3300010333	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_40cm_2_24_1 metaG	Environmental	Open in IMG/M
3300010336	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_09082015	Environmental	Open in IMG/M
3300010396	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2	Environmental	Open in IMG/M
3300011269	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4A metaG	Environmental	Open in IMG/M
3300012198	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_20_16 metaG	Environmental	Open in IMG/M
3300012199	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaG	Environmental	Open in IMG/M
3300012206	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_100_16 metaG	Environmental	Open in IMG/M
3300012207	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_115_16 metaG	Environmental	Open in IMG/M
3300012208	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaG	Environmental	Open in IMG/M
3300012210	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_60_16 metaG	Environmental	Open in IMG/M
3300012211	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaG	Environmental	Open in IMG/M
3300012285	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_20_16 metaG	Environmental	Open in IMG/M
3300012349	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Sage2_R_115_16 metaG	Environmental	Open in IMG/M
3300012356	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_40_16 metaG	Environmental	Open in IMG/M
3300012357	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_60_16 metaG	Environmental	Open in IMG/M
3300012359	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_80_16 metaG	Environmental	Open in IMG/M
3300012515	Arabidopsis rhizosphere microbial communities from North Carolina - M.Col.7.yng.070610	Host-Associated	Open in IMG/M
3300012917	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk2.16 metaG	Environmental	Open in IMG/M
3300012972	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_40cm_5_24_1 metaG	Environmental	Open in IMG/M
3300012976	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_40cm_5_0_1 metaG	Environmental	Open in IMG/M
3300014157	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_20cm_2_24_1 metaG	Environmental	Open in IMG/M
3300015053	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300015264	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300017654	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_40cm_2_24_1 metaG	Environmental	Open in IMG/M
3300017659	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_40cm_5_24_1 metaG	Environmental	Open in IMG/M
3300018468	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111	Environmental	Open in IMG/M
3300019789	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300020004	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H1a2	Environmental	Open in IMG/M
3300025885	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025910	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025922	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300026296	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_20cm (SPAdes)	Environmental	Open in IMG/M
3300026310	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_2_20cm (SPAdes)	Environmental	Open in IMG/M
3300026326	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_127 (SPAdes)	Environmental	Open in IMG/M
3300026329	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_131 (SPAdes)	Environmental	Open in IMG/M
3300026538	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114 (SPAdes)	Environmental	Open in IMG/M
3300027903	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2 (SPAdes)	Environmental	Open in IMG/M
3300031753	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_515	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI25385J37094_101104373	3300002558	Grasslands Soil	GVQPNMRLKLAGLSLLKESEWLCPDGHRASSTVRCAGGLAARSLSAIR*
JGI25385J37094_101494991	3300002558	Grasslands Soil	MRLKLAGLSLLRESEWLCPDGHELSFNDTARGGLAARSLSAIR*
Ga0066690_109452642	3300005177	Soil	VLPNMPLKLAGLSFLRESELLCPNGHELSFNDTACGWLAARSLSAI
Ga0066688_103596352	3300005178	Soil	VKQLPNMRLKLPGLSFIRESEWLWPGGHRTSSTARCAGGLAARSLSAIR*
Ga0066685_105480072	3300005180	Soil	AEPPNMRLKLAGLPLLKESEWLCPDGHGLSFNGTARGGLAARSLSAIR*
Ga0066685_107106951	3300005180	Soil	MPSPSNKQLSNMRLKLAGLSLLSESEWLCPNGHELSFNDPARGGRVARSLSASR*
Ga0070703_103067551	3300005406	Corn, Switchgrass And Miscanthus Rhizosphere	NMRLKLPGLSLLKETVWLCPSGHELTFNDTARGGPVARSLSAIR*
Ga0070694_1017875321	3300005444	Corn, Switchgrass And Miscanthus Rhizosphere	MRLKLPGLSLLKDSERLCPDGHELTFNDTARGGLVARSLSAIR*
Ga0070708_1010322542	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	MPNMRLKLAGLSLLKESERLCPDGHKLSFNGTARGGFAARSLSAIR*
Ga0070708_1011750772	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	MRLKLPGLSLLKETVWLCPSGHELTFNDTARGGPVARSLSAIR*
Ga0070708_1017631261	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	VKMHKPPPNMRLKLAGLSLLKESEWLCPGGHELSFNFKCAAGLAARSLSAIR*
Ga0066682_103686831	3300005450	Soil	RGVQPNMRLKLAGLSLLKESEWLCPDGHRASSTVRCAGGLAARSLSAIR*
Ga0066681_103782141	3300005451	Soil	PNMRLKLAGLSLLKESEWLCPDGHRASSTVRCAGGLAARSLSAIR*
Ga0070706_1001256981	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	NMRLKLAGLSLLRESEWLCPSGHELSFNGAPRDGLVARSLSAIR*
Ga0070706_1001432154	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	VKMLKPPPNMRLKLPGLSLLMESEWLCPGGHELSFNDTPRGGLVARSLSAIR*
Ga0070706_1004229953	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	RLSNMRLKLAGLSLLKESEWLCPNGHELSFNFKSAGGLAARSLSAIR*
Ga0070706_1007922232	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	PNMRLKLPGLSLLKESERLCPRGHELTFNDTARGGLVARSLSAIR*
Ga0070698_1012454812	3300005471	Corn, Switchgrass And Miscanthus Rhizosphere	MRLKLAGLSFLMESEWLCPNGHELSFNGTARGELAARSLSAIR*
Ga0070699_1001722173	3300005518	Corn, Switchgrass And Miscanthus Rhizosphere	MRLKLAGLSLLMESEWLCPGGHELSFNDTPRGGLVARSLSAIR*
Ga0070699_1015109661	3300005518	Corn, Switchgrass And Miscanthus Rhizosphere	MRLKLAGLSLLKESEWLCPGGPELSFNDTPRSGLVARSLSAIR*
Ga0070697_1001866243	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	PNMRLKLAGLSLLKESERLCPDGHKLSFNGTARGGFAARSRSAIR*
Ga0070697_1016432462	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	RLKLAGLSLLKESEWLCPGGHELSFNVRCAGGLAALSLSAIR*
Ga0066697_1000421015	3300005540	Soil	MRLKLAGLSFLRESEWLCSGGHRTSSTRSCAGEPVARSLSAIR*
Ga0070695_1002723443	3300005545	Corn, Switchgrass And Miscanthus Rhizosphere	MRLKLAGLSLFKGIGVLCPGGHELSFNVKCAGGLAARSLSAIR*
Ga0070696_1001057222	3300005546	Corn, Switchgrass And Miscanthus Rhizosphere	MRVPNMRLKLPGVSVLMEAECFCAGAHELTFNDTPRGGRVARSLSAIR*
Ga0070696_1001145734	3300005546	Corn, Switchgrass And Miscanthus Rhizosphere	MRLKLAGLSFLRESEWLCPSGHELSFNHTPRGGLVARSLSAIR*
Ga0066695_101477935	3300005553	Soil	PNMRLKLAGLSLLKESECLCPDGHRTSSPARCAGGLAARSLSAIR*
Ga0066695_103151312	3300005553	Soil	MTGPALPNMRLKLAGLSLLMESEWLCPNEHRTASTASCAGGLAARSLSAIR*
Ga0066692_100271192	3300005555	Soil	MRLKLPGLSLLKESEWLCPDGHVTSSTARFAGGPAARSLSAIR*
Ga0066692_106308692	3300005555	Soil	LSNKRLKLAGLSLLKESERLCPAGHRTSSTASCAGEPAARSLGAIR*
Ga0066703_102871701	3300005568	Soil	MRLKLAGLSLLKESECLCPDGHRTSSPARCAGGLAAR
Ga0066691_101510443	3300005586	Soil	VHTPLSNKRLKLAGLSFLKESERLCPDGHRTVVHFSCAGGLGARSLSAIR*
Ga0066691_102027103	3300005586	Soil	MRLKLAGLSFLKESEWLCPGGHPTSSTTSCAGGLAARSLSAI
Ga0066691_109561083	3300005586	Soil	GLSFLKESERLCPDGHRTVVHFSCAGGLRARSLSAIR*
Ga0066651_105979171	3300006031	Soil	LAGLSFLKEWEWLCPDGHGTSSTASCAAGHVARSLSAIR*
Ga0066656_103934611	3300006034	Soil	PNMRLKLAGLSFLRESEWLCPGGHGTSSTASCAGGLAARSLSAIR*
Ga0066656_104801384	3300006034	Soil	NMRLKLAGLSFTRESECLCPGGHGTSSTSSCADEAVARSLTEIR*
Ga0066665_102599621	3300006796	Soil	EIGASPNMRLKLAGLSFTRESECLCPGGHGTSSTSSCADEAVARSLTEIR*
Ga0066659_100074415	3300006797	Soil	MRLKLAGLSFLRESEWLCSGGHRTSSTRSCAGEPVARSSSAIR*
Ga0066659_110275861	3300006797	Soil	MRLKLAGLSLLKESECLCPDGHRTSSPARCAGGLAARS
Ga0075433_102162093	3300006852	Populus Rhizosphere	MPPNMRLKLAGLSFLKEPEWLCPNGHELSFHDTARGGLAARSLSAIR*
Ga0075425_1001137114	3300006854	Populus Rhizosphere	MRLKLAGLSFLKEPEWLCPNGHELSFHDTARGGLAARSLSAIR*
Ga0075426_108814352	3300006903	Populus Rhizosphere	MPPNMRLKLAGLSLLKESEWLCPGGHELPFNDTAHGELVARSLSAIR*
Ga0066710_1012068162	3300009012	Grasslands Soil	PPNMRLKLAGLSFLGESEWLCPDGHELSFNDCAPCGHVARSLSAIR
Ga0099829_100526793	3300009038	Vadose Zone Soil	VGRLPNMRLKLAGLSFLKESEWLCPNGHRTSSAASCAGALARSLSAIR*
Ga0099830_101032153	3300009088	Vadose Zone Soil	MRLKLAGLSLLRESEWLCPCGHRTSSPVSCAGGHVARSLSAIR*
Ga0066709_1004016692	3300009137	Grasslands Soil	VVAPPNKRLKLPDPSLLKESEWLCPVGQRTSFTGSCADEPVARSLSAIR*
Ga0114129_101091021	3300009147	Populus Rhizosphere	MRLKLAGLSFLKEAEWLCPDGHRTSSTARCAGGLAARSLSAIR*
Ga0105242_119170271	3300009176	Miscanthus Rhizosphere	MRLKLAGLSLLKESDRFALAGHERSFNATARSGPVARSLSAIR*
Ga0134070_100138732	3300010301	Grasslands Soil	MRLKLAGLSFLRESEWLCSGGHSTSSTRSCAGEPVARSLSAIR*
Ga0134086_101483991	3300010323	Grasslands Soil	RLPNMRLKLAGLSLPKEAEWLCPRGHRISSTPRCAGGLAARSLSAIR*
Ga0134064_104188171	3300010325	Grasslands Soil	MRLKLAGLSLPKEAEWLCPRGHRISSTPRCAGGLAARSLSA
Ga0134111_100210501	3300010329	Grasslands Soil	SRCWGWSRNGMRPNMRLKLAGLSFTRESECLCPGGHGTSSTSSCADEAVARSLTEIR*
Ga0134111_103651121	3300010329	Grasslands Soil	VVAPPNKRLKLPDPSLLKESEWLCPVGQRTSFTGSCADEPVARSLSAIR
Ga0134080_101125382	3300010333	Grasslands Soil	HEQRPNMRLKLAGLSFLRESERLCPAGHELSLNDTPRGGLIARSLSATR*
Ga0134071_101352513	3300010336	Grasslands Soil	NKRLKLAGLSFLRESEWLCPDGQWTSSSTSCAGALAARSLSAIR*
Ga0134126_120949042	3300010396	Terrestrial Soil	LSDVAVAPNMRLKLPGLSLLKESEWLTPWRARTDVHLSCAGGFAARSLSAIR*
Ga0137392_101433563	3300011269	Vadose Zone Soil	MRLKLAGLSLLEESEWSCPDGHRTSSNASCAGGLAARSLSAIR*
Ga0137364_100410076	3300012198	Vadose Zone Soil	MRLKLAGLSFLKESEWLCPNGHELSFNDTARGGLAARSLSAIR*
Ga0137364_102769721	3300012198	Vadose Zone Soil	VVAQAQPNMRLKLASLSLLRESEWLCPDGHGLSSAGSCAGGLAARSLSAIR*
Ga0137383_102024682	3300012199	Vadose Zone Soil	MRKRLPNKRLKLPGLSFLRESEWLCPGGHRTSSIASCASGLAARSLSANR*
Ga0137383_105414831	3300012199	Vadose Zone Soil	RLKLAGLSFLREAELLCPDGHSISSTPRCADGPAARSLSATR*
Ga0137383_106017863	3300012199	Vadose Zone Soil	LAGPSLLKESEWLCPDGHGTSSTASCADGLAARSLSAIR*
Ga0137380_101553253	3300012206	Vadose Zone Soil	MRLKLPGLSLLKESEWLCPDRHGVSSTASCAGEPAARSLSAIR*
Ga0137381_105822121	3300012207	Vadose Zone Soil	RLKLAGLSLLKELEWLCPDGHELSFNDHVPCGHGARSLSAGR*
Ga0137376_110517472	3300012208	Vadose Zone Soil	PNMRLKLAGLSLLRESEWLCAGAHEPLFNDTAPGGLLARSLSAIR*
Ga0137376_111042162	3300012208	Vadose Zone Soil	MRLKLAGLSLLKESECLCPDGHRTSSPARCAGGLAARSLSAI
Ga0137378_110405162	3300012210	Vadose Zone Soil	LTGLSLLKEPESLYPGGHELSFNDTPRGGLVARSLSAIR*
Ga0137377_102103181	3300012211	Vadose Zone Soil	NRRLKLAGLSLLGESEWLRPDGHTTSSTTRCAGGRVARSLSAIR*
Ga0137377_103425332	3300012211	Vadose Zone Soil	MGGVAPNKRLKLAGLSLLKESEWLCPGGRGRSSTTLVPAGRVARSLSAIR*
Ga0137377_104884931	3300012211	Vadose Zone Soil	GLSFLKEWEWLCPDGHGTSSTASYAAGHVARSLRAIR*
Ga0137377_107073082	3300012211	Vadose Zone Soil	GLSLLKESEWLCPGGHELSFNDTPRGGLVARTLSAIR*
Ga0137370_105184812	3300012285	Vadose Zone Soil	LVVAQAQPNMRLKLASLSLLRESEWLCPDGHGLSSAGSCAGGLAARSLSASR*
Ga0137387_101792561	3300012349	Vadose Zone Soil	MRLKLPGLSLLKESEWLCPDGHRTSSTVRCAGGLAARGLSA
Ga0137371_109649131	3300012356	Vadose Zone Soil	MRKRLPNKRLKLPGLSFLRESEWLCPGGHRTSSTARCAAGLAARSLSAIR*
Ga0137384_107187281	3300012357	Vadose Zone Soil	MRLPNMRLKLPGLSLLKESEWLRPGGHRTSSAASCAGGLAARSLSAIR*
Ga0137384_107511012	3300012357	Vadose Zone Soil	RLKLAGLSFTRESECLCPGGHGTSSTSSCADGAVARSLGAIR*
Ga0137385_110704911	3300012359	Vadose Zone Soil	MRLKLGGLSLLKESEWLCPGGHRTSSTVRCAGGLAAR
Ga0157338_10709181	3300012515	Arabidopsis Rhizosphere	MPLPNIRLKLAGLSLLKESDRCALAGHERSFNATARSGPVA
Ga0137395_100404202	3300012917	Vadose Zone Soil	MPRPNMRLKLAGLSLLRESEGLCPDGHTPSSTARCAGGLAARSLSAIR*
Ga0137395_104368741	3300012917	Vadose Zone Soil	LSNMRLKLAGLSLLKESEWLCPGGHELSFNDTPRGGLVARSLSAIR*
Ga0134077_105165652	3300012972	Grasslands Soil	GLPLLKESEWLCPDGHGLSFNGTARGGLAARSLSAIR*
Ga0134076_100011959	3300012976	Grasslands Soil	MRLKLAGLSFLRESEWLCSGGHRTSSTRSCAGEPVTRSLSAIR*
Ga0134078_102052601	3300014157	Grasslands Soil	GINAELPNKRLKLPGASVLMESEWLCPGGHGPTSTASCAGGLVARSLTAIR*
Ga0137405_10239351	3300015053	Vadose Zone Soil	RLNLAGLSLLKESEWLCPSQARTDVHLSCAGGLAARSLGAIR*
Ga0137403_104329144	3300015264	Vadose Zone Soil	DDSITVTGLPNMRLKLAGLSFLRESEWLCPDGHRTSSTASCAGGRVARSLSAIR*
Ga0134069_10082962	3300017654	Grasslands Soil	VCLEVAALSNMRLKLAGLSFLRESEWLCSGGHRTSSTRSCAGEPVARSLSAIR
Ga0134069_13377241	3300017654	Grasslands Soil	VVAPPNKRLKLPGLSLLKESEWLCPGGHRPSSTACYAGGPVARSLS
Ga0134083_100890451	3300017659	Grasslands Soil	KRLKLARLSFLRESEWLCPDGHRTSSTARCAGGLAARSLSATR
Ga0066662_129914791	3300018468	Grasslands Soil	GPPNMRLKLAGLSFLKESEWLCPGGHPTSSTTSCAGGLAARSLSAIG
Ga0137408_12387092	3300019789	Vadose Zone Soil	MPRPNMRLKLAGLSLLRESEGLCPDGHTPSSTARCAGGLAARSLSA
Ga0193755_10005322	3300020004	Soil	MRLKLAGLSFLRESEWLYPDGHRTSPIASCAGVHVARSLSAIR
Ga0207653_103308481	3300025885	Corn, Switchgrass And Miscanthus Rhizosphere	TSVIGILEHRPNMRLKLAGLSLLKESEWLCPNGHELSFNFKSAGGLAARSLSAIR
Ga0207684_100639977	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	ALSSKRLKLAGLSLLRESEWLCPSGHELSFNGAPRDGLVARSLSAIR
Ga0207646_1000866916	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	MRLKLAGLSLLKESEWLCPNVHELSFHGTALGGRVARSLSAIR
Ga0207646_1001602510	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	VLPNKRLKLAGLSLLKESERLCPGGHVLSFNDTAPCGPAARSLSAIR
Ga0207646_103515724	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	LKLPGLSLLKETVWLCPSGHELTFNDTARGGPVARSLSAIR
Ga0209235_10351472	3300026296	Grasslands Soil	MMAPPNKRLKLAGLSLSKESEGLCTWRALTLVQYACAGGLAARSLSAIR
Ga0209239_10317893	3300026310	Grasslands Soil	MRLKLAGLSLLKESECLCPDGHRTSSPARCAGGLAARSLSAIR
Ga0209239_10420544	3300026310	Grasslands Soil	LKLAGLSFTRESECLCPGGHGTSSTSSCADEAVARSLTEIR
Ga0209801_10081266	3300026326	Soil	MRLKLAGLSFLRESEWLCSGGHRTSSTRSCAGEPVARSLSAIR
Ga0209375_10011231	3300026329	Soil	RPNMRLKLAGLSFLRESEWLCSGGHRTSSTRSCAGEPVARSLSAIR
Ga0209375_13109202	3300026329	Soil	MRLKLAGLSLPKEAEWLCPRGHRISSTPRCAGGLAARS
Ga0209056_100264518	3300026538	Soil	GASCCLTRVHEIGASPNMRLKLAGLSFTRESECLCPGGHGTSSTSSCADEAVARSLTEIR
Ga0209056_102407791	3300026538	Soil	RRLLPPNMRLKLAGLSLLGESEWLCSDGHTTSSTTRCAGGRAARRLSAIR
Ga0209488_100349574	3300027903	Vadose Zone Soil	MPRPNMRLKLAGLSLLRESEGLCPDGHTPSSTARCAGGLAARSLSAIR
Ga0307477_101217282	3300031753	Hardwood Forest Soil	MRLKLPGISLYMETERWRPGGRELSFNDSPRGGRVARNLSAIR
Ga0307471_1003235493	3300032180	Hardwood Forest Soil	MRLKLAGLSLLKESEWLCPDGHRTASTASCAGGRVGRSLSAIR
Ga0307471_1027564543	3300032180	Hardwood Forest Soil	SMRLKLSGLSLLKESEWLCPGGHELSFNDTARGELVARSLSAIR

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F088603

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences