Scaffold Ga0207646_10004035

Overview

Basic Information

• Taxon OID: 3300025922
• Scaffold ID: Ga0207646_10004035
• Source Dataset Name: Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 16219
• Total Scaffold Genes: 23
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (65.22%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (62.50%)
• Associated Families: 8

Taxonomy: All Organisms → cellular organisms → Archaea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan: Kellogg Biological Station
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002975	Metagenome / Metatranscriptome	516	Y
F005263	Metagenome / Metatranscriptome	406	Y
F005700	Metagenome / Metatranscriptome	392	N
F007915	Metagenome / Metatranscriptome	342	Y
F030030	Metagenome / Metatranscriptome	186	Y
F042845	Metagenome / Metatranscriptome	157	Y
F046962	Metagenome / Metatranscriptome	150	Y
F061700	Metagenome / Metatranscriptome	131	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207646_1000403511	F046962	AGGA	MEQIANVAYQGETVNQTVPQDSLTAEQLRGLLAELISSSASLNLRVWLDGVYTDIELTGIRREWMKGREVYFKLEGKVDSQIGLEEAPAGGI
Ga0207646_1000403512	F042845	GGGGG	MESRKWKAFLRMNGETTVNTSQDILNEFKAMVEYLRCLGVDYSMVVQVEAGQREHSHTLALEQTPPRRESGRVGD
Ga0207646_1000403513	F030030	AGGAG	MAKFIMSIGDNAYDILLNEAKNRDVTVQQLLRAVVVPDWITQNAEGKPHGENGSNLIKPSIYGGDTRNSRMLVSPVARLRH
Ga0207646_1000403514	F002975	GGA	LADFCSRCGKTLSLIDPLLELKGLRFCEDCYPDVKREHAAASMSDKVDRRQRVAFGDDSSEENLRGSIIKGKQALAVKENDFKWDNPSLSLIASALRILTDQNNIMMKQNELILRELESRPATVKSK
Ga0207646_1000403518	F005263	N/A	LTRRTFALELEVGEKIDALVDGHTLEANLLVNKALRRYIEWGRFVESFKLVTTDPRLMKLFWSHLTVDEARQIGLQNGNGTVIEFILSYFRKFDIDSVLKTFRVIGAEYSNAFVYSELGDDRNRTIILRHSMGRSASAYYGASLKALTSRLGLEVELEESDDQLVCKIRRVEKEQRATPRTPTA
Ga0207646_1000403522	F061700	N/A	MCDKCRRFFVISYEKNEKGEVVEIGHELDIRIISSGAVRVDEGEPHRGFERNPPARRYEEQTCW
Ga0207646_100040353	F007915	N/A	MSLAEAAKPALPSSTVRSYAMIGIVLYAFGLVLNEIGNGLTQLWLVPYADTISALGFVIALYTATLAGLGTRLTVLIGLIYGIGIFYVSEPDATYAASGLRISSYNTTHYVGLGLIGFTMILLIALAFYLTRAKSGHGPLPKQDPGSTS
Ga0207646_100040354	F005700	AGGTGG	LTYRTEYTLGFLALLPLLVTGVAKGTGWLVTIIVVYVGVPLLIWSLLVDRLASLALRLICRLRESSGHQYYFERQVGKPGVSRRILRDIRVLVFVFFLSALIVPQVTQVNPQNLVIVSNAFIYVAIFLLAIPSSIHVLLWVLEDSGLRCHNTTRLTVTVPAAWTSRWLSSLGGIGAFVSFAVAMGGNLDRAISLGFTLMISLLPSCILAPTLFYRRLEPGIIAKIRQSKAAMTMARLFPQVSGPPLPSSSAPTLRSVRVTEETKQTTDPHS