Scaffold Ga0207646_10000024

Overview

Basic Information

• Taxon OID: 3300025922
• Scaffold ID: Ga0207646_10000024
• Source Dataset Name: Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 250734
• Total Scaffold Genes: 260
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 173 (66.54%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (55.56%)
• Associated Families: 9

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan: Kellogg Biological Station
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020505	Metagenome	223	Y
F021061	Metagenome / Metatranscriptome	220	Y
F021726	Metagenome	217	Y
F026820	Metagenome / Metatranscriptome	196	Y
F046226	Metagenome	151	Y
F047542	Metagenome / Metatranscriptome	149	Y
F086972	Metagenome / Metatranscriptome	110	N
F096800	Metagenome	104	Y
F102743	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207646_10000024131	F096800	GGAG	VPAEDRCAACDAPLDTARYARCDVCKGARFCIGCARAHLCTERCASNGCIAGLCVHVVRGGVVDPRYGVVE
Ga0207646_10000024148	F026820	N/A	MQVSQVAYDRFVVVLPPADADYRPLADPETLAETAAWLWEFGPTPLLAVVGYDGAAPSWLSAWSPRKIDAAHEGSKRGAAVLLSERADLERFLSEGAPHEHTELLWPSISEAKTFEALSAGGNAWMKTIDAHAKIANKGERFEVEQIEP
Ga0207646_10000024167	F021726	N/A	VRAVRGAPQTVILQAADLPADYVIDKDDTMSPDDLANGLGTTPSVLRDRLAAGYVRSFTKGGDPFVCCVIDSILITTADERAAITTANDFRRRALELGSIQTDLGETIGDESQAFTFQQPTADSVLITLTVLFRYANVVDAVEVTGRIGSFERAYVLEFARKQLQRLRADAEKR
Ga0207646_10000024250	F020505	N/A	MRQTLLLALVLLSVVAPPAAADDGRTHFRRTTPRASLEEDAGTFVIGVPTGRAWGIESELRPLPTERALAVRLVVADDDVREAFARVAYYASATGRPRQIAVVDSEAVTAGESRLLFVALDPPPGAVAYRVRVLARLRAGSERSRDEAIRARLSLIDRAATHFGSLFSRLLPDGP
Ga0207646_1000002450	F021061	GAG	VKRVGAFLPLWALQFVIGMFAVLLAVGLFAALIGSVVRGPTTFFDEVGKTVARIAPQPQADIRSDADLKAVIRAMPDGRLRVASILADQNRVVFTVTADRAAVKAAVQAGDELRISRSTGEVEIVPTGLPGLVDRVQQAIDDLRRSWFGK
Ga0207646_1000002451	F086972	AGGA	MDAFFAGLVFGIAFGMVVVGFLAIGSYQRGFSQALERRKEWRGELVARQVVARRALEQLRKAS
Ga0207646_1000002460	F047542	GGAGG	MTKTIKGLAFAALLALALLASTNTAFAKDVRSGRETAWTDLGPVPTQPGGVTWETILQPLGVTWEE
Ga0207646_1000002461	F046226	GGA	VITAVGSPLRSLGAILFAALLALSLVATTVDALAATPLGGRGGNNAQTENVREFFHGRGITWE
Ga0207646_1000002476	F102743	N/A	MRLFPLLFAIAILAAIIGMSANASETVVRCGQLSDVTTASFVLSSPDSDPLRVAIPDGKRVSEASGYTCVSVLPGKPAAQLVTILAPGMPGYVAQP