Scaffold Ga0207646_10000017

Overview

Basic Information

• Taxon OID: 3300025922
• Scaffold ID: Ga0207646_10000017
• Source Dataset Name: Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 324386
• Total Scaffold Genes: 338
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 247 (73.08%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (62.50%)
• Associated Families: 8

Taxonomy: All Organisms → cellular organisms → Archaea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan: Kellogg Biological Station
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002983	Metagenome / Metatranscriptome	515	N
F006179	Metagenome / Metatranscriptome	379	Y
F009321	Metagenome	319	Y
F011481	Metagenome / Metatranscriptome	290	N
F013627	Metagenome	269	N
F025249	Metagenome	202	Y
F029394	Metagenome	188	Y
F040558	Metagenome	161	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0207646_10000017115	F040558	N/A	MKNFFKFSPKNILLATLSAIFPWLPPVLFEKIDFYFHLVHQPDSYYALSGDRLLVDLASFAVWGIVAAYLLRPRWAIIQIALNALLVWVLFYVACPIYGPGGVWQPECYAVGPDGLVGFRLAGIMFCYGALPVLVNVASKGDALDRRIRPALAIVSGTILSVVMIWFPLSAWFSGVTYLPLFLIFQTVLLIGIPQIATGILAARIGRSLRVGAVSGIISLLVVSAVYWTPQCPGCDRTSLLPLAPIWAIFALLGSITELGLSSRLRLPKLSGWLGTVRMEDVRRVGLALVITVCLWTLVAREFWDPSVLYASSMSAGPGELTLGQPFYPYLGGYYNSTQYRICCVEIGVSISMTNPRLLIPDNFLMAGMGVQSPNCCVDGWDFGWRADVFLLPNSSLIVSGSSWETCDGNGNCGGYMWEHLWYHTQTTLNPQNISTPIYLRMQWEPVTVDGQSRSLVNWYYNTTGVAWTKFGSYLPDRRLGTYFDIGLSGGPASELPQGSAFLYQFGVASKLPVQGWSATLFYPSFQYQGSWRAMERANIVQGDFSYWKVNYRWGGRPYPGVTARSNLLDSTIPADIVTFSYTGGTMKDFTPLW
Ga0207646_10000017128	F029394	N/A	LGLLRRVDVLALLGAVVALFLGPASGPWWTVTGAETSKLLSIQVSPFYLQADAAGLSTSTFFSVPLGSFSSILLIISLIALGASSFHPGTGWSKLAVYFSLSSMTELYLSFLLMYHGALTMLLGVYGVLPPYFGTSRILANVVGLDLNNHPNPSVTASFSLPFYLGFLSIGLIATSLIVNDIVGKRKTREKRGVGAIFTTDSE
Ga0207646_10000017213	F006179	N/A	LSLNGRGFYVLHYSAIPEQDLTRISFDLVDPNTGEGGSAEALVDPKLLEDLNSYNLGISKGQAFLIWIDTSGNEVRWQLRKTVKSDIPRFNAP
Ga0207646_10000017238	F002983	GAG	MTDPNVVIIGSFLLAFKAILVEGSEVAILSLATIKQLGRNNILFGVIAGGLGSILTFLVVWRIFLLLPAIIIDFATAIVLFYFSSRFLRGFIKYAFRHKSFRDKMARMEKEVIEKDLKREGAVDSSQPIRFSVPNSLPVLTITLTEGFEASLVLAAAGAFNIQWTLIGAAVSLLVLVVVSAVSYDYLMRVPRWLLDIIAGVVLLTFGLIFFTSGILSIITGSA
Ga0207646_10000017263	F009321	GAG	LFMADKWAEEREKAVLDTVYYCETCNIIIELGDADIAIHKKELPHHKMRRVMILRCGQCGNVVTDSYAEYSAEKNQFWCKNCISEAGAEAFHSS
Ga0207646_10000017288	F025249	GGAG	MKSLGSRFNNFSAEVRDSSIGSNPRNPPPSVFGIIVVGLLAGLVAGLLAGPNFTLQGFFLGFAGGALVTAGLYFYSAERSPPAK
Ga0207646_10000017333	F011481	AGG	LAKFMLSLRDENFNLLTNEAEDRGITVQELIRAVIIPDWVKINTLAKPNSSGNSEKIRPYQTVSGRQPIIQAMGRLRD
Ga0207646_1000001750	F013627	GGAG	MTTKATLRSIARLLLIIGGIILILEAVLQLSGDIRGLLNFAPRVPSLDFFTSSIVSILVGILALVGAGRISSPAWGIILLVLGFLLIGSLGGILVFIGALIALVATFVKL