Scaffold Ga0207649_10000003

Overview

Basic Information

• Taxon OID: 3300025920
• Scaffold ID: Ga0207649_10000003
• Source Dataset Name: Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 388908
• Total Scaffold Genes: 404
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 273 (67.57%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan, Kellogg Biological Station
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016854	Metagenome / Metatranscriptome	244	Y
F031439	Metagenome / Metatranscriptome	182	Y
F076000	Metagenome	118	Y
F081191	Metagenome / Metatranscriptome	114	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207649_10000003177	F081191	N/A	MSPPRRLPSPEVLVAAIVELADDGFCRRSELALKFPGLGARDLRRALRRAIAQGFVIERRGPDGLFHLAVSSEGWDLHRSG
Ga0207649_10000003179	F016854	AGG	MARSDVKSLPKPDEVWLSCPPYLLMARIVEVDLVSEPPVVSYELHDDDGSLLHEVEHATLDHGWWQTFQRLEPRFG
Ga0207649_10000003205	F031439	AGG	MYLIPLVLIVLLALIAVAWSPIFALIFFVIAFVGFLGYVGLSRRADEKLAPPEQPGRQPQHEAHGGDTGMWGERKA
Ga0207649_10000003376	F076000	GGAGG	MVAVPKGGASQTGWSAIRPVLVGFVIVADAFAVVSLAIVRPPNWFAPFLGFGVVLVGMVALEVWAIRHRRDDERR