NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207660_10000002

Scaffold Ga0207660_10000002


Overview

Basic Information
Taxon OID3300025917 Open in IMG/M
Scaffold IDGa0207660_10000002 Open in IMG/M
Source Dataset NameCorn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)883566
Total Scaffold Genes841 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)589 (70.04%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (100.00%)
Associated Families6

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameUSA: Michigan, Kellogg Biological Station
CoordinatesLat. (o)42.3948Long. (o)-85.3738Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F035213Metagenome / Metatranscriptome172Y
F039331Metagenome164Y
F041156Metagenome / Metatranscriptome160Y
F052509Metagenome / Metatranscriptome142Y
F093675Metagenome / Metatranscriptome106Y
F104917Metagenome100Y

Sequences

Protein IDFamilyRBSSequence
Ga0207660_10000002286F104917GAGGMQGPERATPPPAVRLEPGAATRVARGPITVLTRGTDAIWSVLHALGAHRWRDGYETDLERGWSRYRGSRCAICDDPWEGW
Ga0207660_10000002627F052509AGGAGGMRHADAELQLWLANDRISRDQHEVEMARLARAGGGTPTIRQRAGQAVIALGERLAGDGRPAGEAPRLMTRAL
Ga0207660_10000002636F039331AGGMIEIEMPCCGTPALIAELTDDVGCEICGVVLELADPAPEALAAAA
Ga0207660_10000002769F041156GGTGGVEIDFRSLAVVMTRTSAMLLFAALLILVLLPAALAANSR
Ga0207660_10000002790F093675GGAGGMAPFIAIILSIGFATLIGIAAAGFGADTRPTYRDDHAR
Ga0207660_10000002791F035213GGAGMHALAPYMAALHQQTLLEEAEVDRLLRRARSSQPGVSAWRRSLGGGARRLSGVLASAAHSLDPSVEAERTKVRTSERTVGRALAC
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