Scaffold Ga0207684_10506887

Overview

Basic Information

• Taxon OID: 3300025910
• Scaffold ID: Ga0207684_10506887
• Source Dataset Name: Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1034
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan: Kellogg Biological Station
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000280	Metagenome / Metatranscriptome	1383	Y
F000805	Metagenome / Metatranscriptome	883	Y
F001079	Metagenome / Metatranscriptome	785	Y
F066970	Metagenome / Metatranscriptome	126	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207684_105068871	F000805	AGGAG	MAMPSGDSPEKAQKFYHYLQGHQETMQSAATWHVRWLDLAWLWGFVIALVVAILLWIWQYRSTRQGRTLYPVDSFGGYTTELAGPATFFFIVLTVVLTGWAVALIVGHLVWGQKF
Ga0207684_105068872	F001079	AGAAG	MATPVPSALPYVAWASATFAEIPVADWETVYASMQALKAHVQEYPGCQKLEAFVELAGAGAVRVDCYTVWDTPEQLDAFLERGYTFERMLKAVANLSAEPTRVMEKVF
Ga0207684_105068873	F000280	AGAAGG	MAEEPRTRPARPLVGYRDVGEDVRHSRRAETRAWVILAGLMAIYLGWTLVIYFLEPGLR
Ga0207684_105068874	F066970	N/A	MWVKHLSSLQFLTYVAFFSVVVAAICKFVPGRAAPVRDTPY