Scaffold Ga0207684_10083447

Overview

Basic Information

• Taxon OID: 3300025910
• Scaffold ID: Ga0207684_10083447
• Source Dataset Name: Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2721
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan: Kellogg Biological Station
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000334	Metagenome / Metatranscriptome	1279	Y
F027951	Metagenome / Metatranscriptome	193	Y
F055971	Metagenome / Metatranscriptome	138	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207684_100834471	F055971	N/A	AWSEGGYHGFTVEGGTWGAISSAGEVLTGGTPDALNLAISAHWQAMRG
Ga0207684_100834472	F027951	AGG	MSQGRDRPDLRVVDGREDPVLRRQRFEQAHPEAVILPPSAGRWRAIVPPGLIPGDGTRTTLGAWNLGDLMDQLDAIYTDSGRDTTG
Ga0207684_100834473	F000334	N/A	MADRAEWQAATRRQRQLAVAADAELRRRHPSRYFGPLRSAEPGPATGAQRTELTMTAGEETPEIGQWIRDLAAGRRTFADRLADRQSVKIPSEDPDYGDLGQAFPAWSGSPREAILQPPRPEMTPSPRILQRAMDRDAGWEAAD