Scaffold Ga0207684_10044358

Overview

Basic Information

• Taxon OID: 3300025910
• Scaffold ID: Ga0207684_10044358
• Source Dataset Name: Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3770
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (62.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan: Kellogg Biological Station
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018559	Metagenome / Metatranscriptome	234	Y
F069027	Metagenome / Metatranscriptome	124	N
F104063	Metagenome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0207684_100443581	F104063	GAGG	MSRAAVAAGIVGLLLFVEPPLDGLAGYLLFQEGHRIVGTIVFSVNAVIAVGVVLSFLPEWFHPPGLTLAAAIAHYNVNVWLGLVALAYAVAVRAWPPALVLLVGAVLVAIGGRGVVAWLSSGRSKL
Ga0207684_100443584	F069027	AGGGGG	MRMQSTALVGVAFVLLSGCGGQLGAGSVDAARAACLEAARKKGDQPIETENVKVLGEGRYEMSVRNKTTLGSSVTTCTYDKNIGAAIR
Ga0207684_100443586	F018559	N/A	MEHSPTSATGTGWERTPWHATQRAAWEALKKGEESKG