Scaffold Ga0207684_10000094

Overview

Basic Information

• Taxon OID: 3300025910
• Scaffold ID: Ga0207684_10000094
• Source Dataset Name: Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 165810
• Total Scaffold Genes: 170
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 107 (62.94%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan: Kellogg Biological Station
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022380	Metagenome	214	N
F032564	Metagenome	179	Y
F038172	Metagenome / Metatranscriptome	166	Y
F059842	Metagenome	133	Y
F069789	Metagenome	123	N
F075911	Metagenome	118	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207684_10000094100	F069789	GAG	LTWRRTALVAGWIATAGWGIYYLIALAGSSPAFVANAVLHFIGGYVWARAIMTPQLSVPLALAGTFFAGVYTRLAVSFATPEIVFAPLGPIVAIALADASSQRNILFSVIAFGLGLVAFLWLAP
Ga0207684_10000094151	F022380	AGG	VSLLAGLIAGLIVAAIYVIAGHLRIETPQLVLSGNSTLALATASVLVPLAILWGWTWVSDRWSGRSGPRLLLFNLGLVLATAAAFPLDAVVTASAPDRIVFDPRISVNAVDGILWVLPVVAIAGMLYWLFGSGKLPVGLPMLAFAYLVGLPLGLFFPPAAMGAVAGTAAGHAWREPGARTLIVVLVIVLMLVAAVELPLAAATVNGPLFK
Ga0207684_10000094153	F059842	N/A	VVAVAIVAGYLAGLIVAVLTIGAENSRIAFGGYALSGNGALIVPAILSPYALYPGWAWSLAHEGDRRLEAALYTGGLYFGVGSISLLEAAFFPQSADVTLLSAVPGFLVTGALFVIPGALFGAATLWLIRSGHVAVTPLTAAFGIVIAALTALLFGAGLGILTGGAVALALQRPARRTTIGAVLLILLIVVGNAPFIPALLTPSGPTR
Ga0207684_1000009450	F075911	GGA	VRLALVALAALVVVACAPASVPPLRVTRYSTIPENHYPAFDRSVDDAAAARRVYDAVRALPPAPNRWCPAGFGLRYRLTFNEAARVTLLVVVEGDACAEAIFSESDRRATDDVFWDLLADTLGVKKSEIRYLLPNELRR
Ga0207684_1000009458	F038172	GGAGG	MRRLLLAFVISLLTLGAFAAPAAAKCPTCLDGVSVQTPDGQRWTDGKPVTLVVTARRGDPGAAFPTTGLAVIMQTDRERTKCLDVPLKLVSQSGDGAVYAGVFYPFKAAIYSGLVQFGDFKFDVTIDVNKVAATTPVATNDLPVAAPEQATGETLNYTIGTIPFLVLAIGFWSALALLLARRQPRMRTV
Ga0207684_1000009496	F032564	N/A	VAEETSIIFAKDDVIIVEEPLASVAAKLAAGGFVRFERGGEIVMVNAAAVRYLRTVRQAQGGR