Scaffold Ga0207684_10000013

Overview

Basic Information

• Taxon OID: 3300025910
• Scaffold ID: Ga0207684_10000013
• Source Dataset Name: Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 443468
• Total Scaffold Genes: 476
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 328 (68.91%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (75.00%)
• Associated Families: 8

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan: Kellogg Biological Station
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009880	Metagenome	311	Y
F011779	Metagenome	287	Y
F012612	Metagenome	279	Y
F014369	Metagenome	263	Y
F025676	Metagenome / Metatranscriptome	200	Y
F033731	Metagenome / Metatranscriptome	176	Y
F065498	Metagenome / Metatranscriptome	127	Y
F070667	Metagenome	123	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207684_10000013134	F025676	GGAGG	MTPAHASRRQTGLVARLGLVEMPTQAKPFVTTTARLWYKSAVARGLAGSGAPQNVRYGYGPRISRPSGAGVIGHHANPLEGEVIDE
Ga0207684_10000013181	F014369	N/A	MLVLAAVVVMTLSACAGSQVAPTASPTLGCAEPTRITLLPPFDDQNKATWKQELAAGTACDAATTAYYARLDEKKADELFANASTFAMIGRVTDAASGAPIEQVCITPGKPGAICWSRTDKDGWYLLDLGSVYAHEGFYEIFFVKAGYPEQHSISRMLSGHARIDFQMTK
Ga0207684_10000013333	F012612	AGGAG	VVTWEMPDGTEFRYLGIGVSDAALREFVLRFMSSEGMSWDASAWDDRQLELAFLRRFGETVKVLREKSAGRTVLVFQPAMAGA
Ga0207684_10000013352	F011779	GGA	MSSVLRGIWDNAYGLLVDDGQLAVGAIAALIVTWFVAQSGALRENAGWLLLILVLALVVANLYRAGRNARRQVA
Ga0207684_10000013393	F033731	GGAGG	MSTVIHFECRNTTHLATRSRGGVGGIVMHHGTFGYCDGFASDSDHHWIPTGGVFLEQLIREEVDDARYVPHAIGDVGPLHLTR
Ga0207684_10000013395	F070667	AGGAGG	MAKSGSIHYVCIADAHATRERRSSSDTLTVVAGRWAYCGFDAKGEGHKWTETEGVTIEALRSGLPKGRLAQLPAEDRSR
Ga0207684_1000001345	F065498	AGG	VTGCGCLLIIAALVGLGVFLIFGSTDPGEPIETAVALFAALSLGQRLALVPGRRMLVRARRA
Ga0207684_1000001389	F009880	N/A	MTNLLDVAFPHRTRRSFGAASFALIFLILLGEIELLVFVALAIVAHRLDLFMDLQPIVLPGACLVALSAAGVFWWRARQWTKQRIEMLNLWAQGGTAYGERLAKSRQQR