Scaffold Ga0207684

Basic Information
Taxon OID	3300025910 Open in IMG/M
Scaffold ID	Ga0207684_10000007 Open in IMG/M
Source Dataset Name	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Ga0207684_10000007 Open in IMG/M

Source Dataset Name

Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	612969
Total Scaffold Genes	677 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	480 (70.90%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (85.71%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

612969

Total Scaffold Genes

677 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

480 (70.90%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (85.71%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location Name	USA: Michigan: Kellogg Biological Station
Coordinates	Lat. (^o)	42.3948	Long. (^o)	-85.3738	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Michigan: Kellogg Biological Station

Coordinates

Lat. (^o)

42.3948

Long. (^o)

-85.3738

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F006566	Metagenome / Metatranscriptome	370	Y
F006645	Metagenome	368	Y
F012839	Metagenome / Metatranscriptome	277	Y
F014330	Metagenome	264	Y
F020969	Metagenome / Metatranscriptome	221	Y
F028129	Metagenome	192	N
F073936	Metagenome	120	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207684_10000007127	F012839	AGGAG	MAIAHTSMHQVGPHTWTFEAPAVPVAPMKANCRACRQSVAILRPSAMDLKTGNYVVRGECERCGAEVLLIVS
Ga0207684_10000007142	F073936	GAG	MTGRPLFSMLIFAGIVVAVMWFFVLPALTTFKPTLP
Ga0207684_1000000715	F014330	GGAGG	MAVVHEHEDGDGSSAAVVAIFLIALIVILAIFFYGFAFAHWFGVGNPTIVVPNTSSAPSIAASASASASASP
Ga0207684_1000000721	F028129	GAG	MHQPGNILSLRFDAPAVAHTSRTPAQLTFCYQCHSAVDLGATTTALRSGHWARIGTCAHCGTTITRILKAS
Ga0207684_10000007348	F020969	GGAGG	MSLSKILLILALICFILEALSGRIKMKFGFGLLAAGLAFLTASYLF
Ga0207684_1000000752	F006645	N/A	MLIWGLLLCLAGWVLLRIAVRAGRRAALFSSAFWLTFLEFARYRIRRLWPAGFGLVGLILLIWGLIFLFRWLLAYYNARLGHPLS
Ga0207684_10000007627	F006566	GGA	MVDTQVAQSGWFDWLQQETSFVPERAEDLVVTSVRVLQLNGRFLYLKATTDLGQFSAGERRILEALTHQGDTVFVAVSPDPGHIRLSYRMPDLENAVAFDADGLRGLIRQWAIWASATESSSE

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0207684_10000007

Overview

Ecosystem & Geography

Associated Families

Sequences