Scaffold Ga0207684_10000002

Overview

Basic Information

• Taxon OID: 3300025910
• Scaffold ID: Ga0207684_10000002
• Source Dataset Name: Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1042751
• Total Scaffold Genes: 1058
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 730 (69.00%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (44.44%)
• Associated Families: 9

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan: Kellogg Biological Station
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002096	Metagenome / Metatranscriptome	594	Y
F020473	Metagenome / Metatranscriptome	224	Y
F028604	Metagenome / Metatranscriptome	191	Y
F043785	Metagenome	155	Y
F044928	Metagenome	153	N
F044993	Metagenome	153	Y
F046732	Metagenome	151	Y
F072825	Metagenome	121	Y
F103040	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207684_1000000213	F072825	N/A	MSAALLVLPLIGMLAAYGYALTTVKFTLSGLAAAAGLVGIAGTGLLYAWRAVSGASVE
Ga0207684_10000002158	F046732	GGCGG	MVMYLLMAAAFVLGGVLLGVGLYLTRQDEFPHWWRSWMLWPLVEVTPRVTHLQGWAGAALGVSILAIGFTPVVPEILGGVLVLIALVGYLAGAALFAYSTYLSRRVAR
Ga0207684_10000002217	F002096	N/A	MTFIVCWLLHRREREVLLQGVLPWGIDAVVFCWRCDRMRGRAVRVLQLNHTHAGW
Ga0207684_10000002235	F044928	GGAGG	MAKDSSQMARDYIDGALKTRARLGRSAKPSKAAYARAVSLARQAMEELISLAPRATPRSGLGRKGRHN
Ga0207684_10000002237	F020473	N/A	MIESKDVVLGALGAAAALAGLVLVFLGIVIAAYQSYAGNAPAAVVRPFRIAGIALFGTFGLSLLTVALCMAWLALGGPHWLYGWTVGFFVLQLIAAFVAAGWTSRMVLWP
Ga0207684_10000002395	F028604	AGAAG	VGAGTIGHVSEDLGPVLELNPVDAVGKRLHHDPLHE
Ga0207684_10000002524	F044993	N/A	MWTAKIVTNDPHVGMNPERDTFYGFHPNPGYDDWYGYFYGDFRGTAGDASGWVNLLHEDYPNHYHWNFADNGWAVHGHAKQYIAYYNWTFGGECGLGSYGSESPPPYMADQYGYPVVDIYVDSVPPQSPRPQVLRASTSSVAFTWDPVVDQGDGAGADYFVAGMDHYTSWVTMNGSSQPLQLQATFEPRVVTRADMSPLDVACIHVQAFDKVQNASPEQSVCSRALATPPMPPWTALAARVAANPAGVGLVGLDSWFWLDPAPHAVTIHEISGGNDYAITATPQSATWDFGDGGIADLVGPSGYGRPYPQPSSITHVFEAHAQDGYIVRASVRYAVTWTATMAGRNPETHPMGMFVETALPLRYPVKQAQPELLRI
Ga0207684_10000002660	F043785	N/A	LKADGAAGGVEHKVESIRHKLPALWDRAASALAQGQDHLAGLALRRRQVLLRELDNLSQLIASEAPRSRVLSRIEAADRLLDASLSEASRTSQPQPREPVILDLDPAVQSDLQRLRAELRNETWPGTVSEEQEGGS
Ga0207684_10000002947	F103040	AGGAGG	MRKLAAFGISLAAIALASTPVVASDANGNHEAYHWVVAGDTAMAPDGSTILLRGSGNLQAGPGGFATGGGTFKKSSGETGTFTATGIEGFVSYGTRLPGQTFPPPPATGGEAKLRVALSNGQTGVLTIVCVIGSPPPSRMEGSTLVLGSGVSGEYTDEVSGNTIFFAL