Scaffold Ga0207705_10001376

Overview

Basic Information

• Taxon OID: 3300025909
• Scaffold ID: Ga0207705_10001376
• Source Dataset Name: Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 19428
• Total Scaffold Genes: 24
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 21 (87.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan, Kellogg Biological Station
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002023	Metagenome / Metatranscriptome	603	Y
F005075	Metagenome / Metatranscriptome	413	Y
F094086	Metagenome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207705_1000137610	F094086	GGA	MTNDQIRGEHDRLQVVLEAYEARAVADSIPDHHAGLRQRIAALALKLTEKDVA
Ga0207705_1000137611	F005075	GAGG	VLGVLAAVLLLGSVIAWVKLVRGPLLQRTDGSTGTDSAQGELASELLFWAAGLSTAAVFLAIAGWIFI
Ga0207705_100013769	F002023	GGAG	MTQSVLLVAVTAFLTWIIMRSVRSRTADPKRLSAQESEAERAKEVGSQLDGARDRASVVEVERNKLALAKAVKAALWVTDARLNAAVPELLKMAQLWAGKSSVRGKKWTAPKGVTDIEGLDNSAAAWASWRFDGHHWRIEGQWQPSTLPEEIEGDVGTFKVLVDRQLVLDMTISTEDPQLLWVDALTVGPWVSELLAFAGARTSDAKARSSARSARKNQNRADNIHWS