Metagenome Family F094086

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F094086
Family Type	Metagenome
Number of Sequences	106
Average Sequence Length	55 residues
Representative Sequence	MTNDQIRGEHDRLQVVLEAYEARAVADSIPDHHAGLRQRIAGLALKLAEKDVA
Number of Associated Samples	78
Number of Associated Scaffolds	106

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	75.47 %
% of genes near scaffold ends (potentially truncated)	22.64 %
% of genes from short scaffolds (< 2000 bps)	81.13 %
Associated GOLD sequencing projects	67
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.75

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (58.491 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere (15.094 % of family members)
Environment Ontology (ENVO)	Unclassified (55.660 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (67.925 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 54.32% β-sheet: 0.00% Coil/Unstructured: 45.68%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.75
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.75
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Structural matches with SCOPe domains

SCOP family	SCOP domain	Representative PDB	TM-score
a.2.17.1: VPS23 C-terminal domain	d2f6ma2	2f6m	0.87292
a.4.5.61: PadR-like	d1yg2a_	1yg2	0.85007
e.57.1.1: Vacuolar ATP synthase subunit C	d1u7la_	1u7l	0.84044
c.108.1.23: 5' nucleotidase-like	d4ohfa1	4ohf	0.83825
a.4.5.0: automated matches	d5x14a1	5x14	0.83351

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 106 Family Scaffolds
PF01165	Ribosomal_S21	2.83
PF01471	PG_binding_1	2.83
PF14534	DUF4440	2.83
PF00072	Response_reg	2.83
PF03734	YkuD	1.89
PF00313	CSD	1.89
PF01522	Polysacc_deac_1	1.89
PF08332	CaMKII_AD	1.89
PF13474	SnoaL_3	1.89
PF10604	Polyketide_cyc2	0.94
PF02518	HATPase_c	0.94
PF02897	Peptidase_S9_N	0.94
PF00239	Resolvase	0.94
PF01638	HxlR	0.94
PF00067	p450	0.94
PF14821	Thr_synth_N	0.94
PF13401	AAA_22	0.94
PF03237	Terminase_6N	0.94
PF04226	Transgly_assoc	0.94
PF02900	LigB	0.94
PF02885	Glycos_trans_3N	0.94
PF07859	Abhydrolase_3	0.94
PF00108	Thiolase_N	0.94
PF00583	Acetyltransf_1	0.94
PF03976	PPK2	0.94
PF13645	YkuD_2	0.94

COG ID	Name	Functional Category	% Frequency in 106 Family Scaffolds
COG0828	Ribosomal protein S21	Translation, ribosomal structure and biogenesis [J]	2.83
COG0726	Peptidoglycan/xylan/chitin deacetylase, PgdA/NodB/CDA1 family	Cell wall/membrane/envelope biogenesis [M]	1.89
COG1376	Lipoprotein-anchoring transpeptidase ErfK/SrfK	Cell wall/membrane/envelope biogenesis [M]	1.89
COG3034	Murein L,D-transpeptidase YafK	Cell wall/membrane/envelope biogenesis [M]	1.89
COG4875	Protein kinase association domain CaMKII_AD, NTF2-like superfamily	Posttranslational modification, protein turnover, chaperones [O]	1.89
COG0183	Acetyl-CoA acetyltransferase	Lipid transport and metabolism [I]	0.94
COG0657	Acetyl esterase/lipase	Lipid transport and metabolism [I]	0.94
COG1505	Prolyl endopeptidase PreP, S9A serine peptidase family	Amino acid transport and metabolism [E]	0.94
COG1733	DNA-binding transcriptional regulator, HxlR family	Transcription [K]	0.94
COG1770	Protease II	Amino acid transport and metabolism [E]	0.94
COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	Replication, recombination and repair [L]	0.94
COG2124	Cytochrome P450	Defense mechanisms [V]	0.94
COG2261	Uncharacterized membrane protein YeaQ/YmgE, transglycosylase-associated protein family	General function prediction only [R]	0.94
COG2326	Polyphosphate kinase 2, PPK2 family	Energy production and conversion [C]	0.94
COG2452	Predicted site-specific integrase-resolvase	Mobilome: prophages, transposons [X]	0.94

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	58.49 %
Unclassified	root	N/A	41.51 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	58.49 %
Unclassified	root	N/A	41.51 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	58.49 %
Unclassified	root	N/A	41.51 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	41.51 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	33.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	41.51 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	30.19 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	41.51 %
Sphingomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales	21.70 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	41.51 %
Sphingomonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	18.87 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	0.94 %
Erythrobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Erythrobacteraceae	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	41.51 %
Sphingomonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	16.98 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.94 %
Pelagerythrobacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Erythrobacteraceae → Pelagerythrobacter	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	41.51 %
unclassified Sphingomonas	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → unclassified Sphingomonas	1.89 %
Pelagerythrobacter marinus	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Erythrobacteraceae → Pelagerythrobacter → Pelagerythrobacter marinus	0.94 %
Sphingomonas lutea	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → Sphingomonas lutea	0.94 %
Sphingomonas vulcanisoli	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → Sphingomonas vulcanisoli	0.94 %
Sphingomonas ginkgonis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → Sphingomonas ginkgonis	0.94 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	41.51 %
Sphingomonas sp.	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → unclassified Sphingomonas → Sphingomonas sp.	0.94 %
Sphingomonas sp. URHD0057	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → unclassified Sphingomonas → Sphingomonas sp. URHD0057	0.94 %
Pelagerythrobacter marinus	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Erythrobacteraceae → Pelagerythrobacter → Pelagerythrobacter marinus	0.94 %
Sphingomonas lutea	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → Sphingomonas lutea	0.94 %
Sphingomonas vulcanisoli	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → Sphingomonas vulcanisoli	0.94 %
Sphingomonas ginkgonis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → Sphingomonas ginkgonis	0.94 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.94 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300004114\|Ga0062593_100735281	Not Available	969	Open in IMG/M
3300004114\|Ga0062593_101534539	Not Available	719	Open in IMG/M
3300004156\|Ga0062589_101593238	Not Available	646	Open in IMG/M
3300004463\|Ga0063356_102977528	Not Available	730	Open in IMG/M
3300004463\|Ga0063356_106257954	Not Available	510	Open in IMG/M
3300004480\|Ga0062592_101295707	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → unclassified Sphingomonas → Sphingomonas sp.	687	Open in IMG/M
3300005163\|Ga0066823_10091158	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	613	Open in IMG/M
3300005184\|Ga0066671_11014472	Not Available	521	Open in IMG/M
3300005186\|Ga0066676_10170171	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	1382	Open in IMG/M
3300005186\|Ga0066676_10262855	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1131	Open in IMG/M
3300005327\|Ga0070658_10663692	Not Available	905	Open in IMG/M
3300005327\|Ga0070658_11242242	Not Available	647	Open in IMG/M
3300005331\|Ga0070670_100929026	Not Available	789	Open in IMG/M
3300005337\|Ga0070682_100425440	Not Available	1010	Open in IMG/M
3300005337\|Ga0070682_101059116	All Organisms → cellular organisms → Bacteria	677	Open in IMG/M
3300005339\|Ga0070660_100062082	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2902	Open in IMG/M
3300005339\|Ga0070660_101075506	Not Available	680	Open in IMG/M
3300005339\|Ga0070660_101487982	Not Available	576	Open in IMG/M
3300005344\|Ga0070661_100028382	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	4036	Open in IMG/M
3300005344\|Ga0070661_100134344	Not Available	1860	Open in IMG/M
3300005344\|Ga0070661_100717489	Not Available	816	Open in IMG/M
3300005347\|Ga0070668_100000046	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales	76765	Open in IMG/M
3300005347\|Ga0070668_101298356	All Organisms → cellular organisms → Bacteria	661	Open in IMG/M
3300005353\|Ga0070669_100151997	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Erythrobacteraceae → Pelagerythrobacter → Pelagerythrobacter marinus	1793	Open in IMG/M
3300005366\|Ga0070659_100746690	All Organisms → cellular organisms → Bacteria	848	Open in IMG/M
3300005445\|Ga0070708_101587401	Not Available	609	Open in IMG/M
3300005455\|Ga0070663_100103209	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	2131	Open in IMG/M
3300005534\|Ga0070735_10382516	All Organisms → cellular organisms → Bacteria → Proteobacteria	843	Open in IMG/M
3300005539\|Ga0068853_100217311	All Organisms → cellular organisms → Bacteria	1744	Open in IMG/M
3300005548\|Ga0070665_101370762	Not Available	716	Open in IMG/M
3300005568\|Ga0066703_10309198	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → Sphingomonas lutea	955	Open in IMG/M
3300005568\|Ga0066703_10787505	Not Available	544	Open in IMG/M
3300005575\|Ga0066702_10757397	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	578	Open in IMG/M
3300005577\|Ga0068857_100116463	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	2404	Open in IMG/M
3300005577\|Ga0068857_101521031	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	652	Open in IMG/M
3300005578\|Ga0068854_100030552	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	3737	Open in IMG/M
3300005578\|Ga0068854_100114047	All Organisms → cellular organisms → Bacteria	2042	Open in IMG/M
3300005587\|Ga0066654_10204991	Not Available	1026	Open in IMG/M
3300005617\|Ga0068859_100105157	Not Available	2882	Open in IMG/M
3300005719\|Ga0068861_102444746	All Organisms → cellular organisms → Bacteria	525	Open in IMG/M
3300005834\|Ga0068851_10853096	All Organisms → cellular organisms → Bacteria	568	Open in IMG/M
3300005844\|Ga0068862_101409650	All Organisms → cellular organisms → Bacteria	700	Open in IMG/M
3300006046\|Ga0066652_100116509	All Organisms → cellular organisms → Bacteria → Proteobacteria	2184	Open in IMG/M
3300006046\|Ga0066652_100698046	Not Available	965	Open in IMG/M
3300006195\|Ga0075366_10241257	Not Available	1102	Open in IMG/M
3300006846\|Ga0075430_100066795	All Organisms → cellular organisms → Bacteria	3020	Open in IMG/M
3300007004\|Ga0079218_13207213	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	553	Open in IMG/M
3300009012\|Ga0066710_100886459	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1372	Open in IMG/M
3300009137\|Ga0066709_101726112	Not Available	885	Open in IMG/M
3300009137\|Ga0066709_102218582	Not Available	756	Open in IMG/M
3300009177\|Ga0105248_11499603	Not Available	763	Open in IMG/M
3300009551\|Ga0105238_11270582	Not Available	762	Open in IMG/M
3300010040\|Ga0126308_10092384	All Organisms → cellular organisms → Bacteria → Proteobacteria	1840	Open in IMG/M
3300010045\|Ga0126311_11874309	Not Available	509	Open in IMG/M
3300010364\|Ga0134066_10455994	Not Available	501	Open in IMG/M
3300012208\|Ga0137376_11293603	Not Available	619	Open in IMG/M
3300012209\|Ga0137379_10909956	Not Available	784	Open in IMG/M
3300012210\|Ga0137378_11728682	All Organisms → cellular organisms → Bacteria	531	Open in IMG/M
3300012212\|Ga0150985_101385016	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	948	Open in IMG/M
3300012212\|Ga0150985_109001600	All Organisms → cellular organisms → Bacteria	1506	Open in IMG/M
3300012212\|Ga0150985_115786117	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	744	Open in IMG/M
3300012212\|Ga0150985_116150807	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	842	Open in IMG/M
3300012212\|Ga0150985_119571727	All Organisms → cellular organisms → Bacteria	885	Open in IMG/M
3300012353\|Ga0137367_10741521	Not Available	683	Open in IMG/M
3300012469\|Ga0150984_101419785	All Organisms → cellular organisms → Bacteria	1353	Open in IMG/M
3300012469\|Ga0150984_107246886	Not Available	1269	Open in IMG/M
3300012923\|Ga0137359_11274013	Not Available	623	Open in IMG/M
3300012955\|Ga0164298_11655637	Not Available	506	Open in IMG/M
3300012960\|Ga0164301_10619798	All Organisms → cellular organisms → Bacteria	802	Open in IMG/M
3300013100\|Ga0157373_10081207	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → Sphingomonas ginkgonis	2286	Open in IMG/M
3300013100\|Ga0157373_10109489	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	1942	Open in IMG/M
3300013100\|Ga0157373_10118473	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	1861	Open in IMG/M
3300013100\|Ga0157373_10304141	Not Available	1132	Open in IMG/M
3300013102\|Ga0157371_10341791	All Organisms → cellular organisms → Bacteria	1089	Open in IMG/M
3300013307\|Ga0157372_10198211	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	2325	Open in IMG/M
3300013307\|Ga0157372_10382771	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → Sphingomonas vulcanisoli	1639	Open in IMG/M
3300019888\|Ga0193751_1060543	All Organisms → cellular organisms → Bacteria → Proteobacteria	1585	Open in IMG/M
3300021363\|Ga0193699_10136357	Not Available	1006	Open in IMG/M
3300025321\|Ga0207656_10551646	All Organisms → cellular organisms → Bacteria	587	Open in IMG/M
3300025901\|Ga0207688_10807770	Not Available	594	Open in IMG/M
3300025904\|Ga0207647_10077842	All Organisms → cellular organisms → Bacteria	1993	Open in IMG/M
3300025904\|Ga0207647_10315065	Not Available	889	Open in IMG/M
3300025909\|Ga0207705_10001376	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	19428	Open in IMG/M
3300025909\|Ga0207705_10464697	All Organisms → cellular organisms → Bacteria	982	Open in IMG/M
3300025912\|Ga0207707_10735813	Not Available	826	Open in IMG/M
3300025917\|Ga0207660_11616187	Not Available	522	Open in IMG/M
3300025919\|Ga0207657_10080320	All Organisms → cellular organisms → Bacteria	2741	Open in IMG/M
3300025920\|Ga0207649_10053653	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	2506	Open in IMG/M
3300025920\|Ga0207649_10255013	All Organisms → cellular organisms → Bacteria	1265	Open in IMG/M
3300025924\|Ga0207694_11515259	Not Available	566	Open in IMG/M
3300025931\|Ga0207644_10000025	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	152401	Open in IMG/M
3300025945\|Ga0207679_10420277	All Organisms → cellular organisms → Bacteria	1180	Open in IMG/M
3300025972\|Ga0207668_10513302	All Organisms → cellular organisms → Bacteria	1033	Open in IMG/M
3300025981\|Ga0207640_10514607	All Organisms → cellular organisms → Bacteria	999	Open in IMG/M
3300026041\|Ga0207639_11580470	All Organisms → cellular organisms → Bacteria	615	Open in IMG/M
3300026088\|Ga0207641_10056603	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3333	Open in IMG/M
3300026116\|Ga0207674_10709690	All Organisms → cellular organisms → Bacteria	971	Open in IMG/M
3300026319\|Ga0209647_1024710	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → unclassified Sphingomonas → Sphingomonas sp. URHD0057	3636	Open in IMG/M
3300026527\|Ga0209059_1194857	Not Available	690	Open in IMG/M
3300026550\|Ga0209474_10107644	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales	1868	Open in IMG/M
3300027288\|Ga0208525_1013651	All Organisms → cellular organisms → Bacteria	908	Open in IMG/M
3300027288\|Ga0208525_1044640	Not Available	555	Open in IMG/M
3300028380\|Ga0268265_10065453	Not Available	2805	Open in IMG/M
3300031740\|Ga0307468_101523288	Not Available	621	Open in IMG/M
3300032080\|Ga0326721_10197025	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1061	Open in IMG/M
3300034268\|Ga0372943_0035861	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2714	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Host-Associated	Host-Associated	58.49%
Environmental	Environmental	41.51%

Habitat	Taxonomy	Distribution
Plants	Host-Associated → Plants	58.49%
Terrestrial	Environmental → Terrestrial	41.51%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	41.51%
Rhizosphere	Host-Associated → Plants → Rhizosphere	33.96%
Rhizoplane	Host-Associated → Plants → Rhizoplane	23.58%
Roots	Host-Associated → Plants → Roots	0.94%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	36.79%
Soil	Host-Associated → Plants → Rhizosphere → Soil	23.58%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	18.87%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	10.38%
Loam	Environmental → Terrestrial → Soil → Loam	4.72%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	4.72%
Bulk Soil	Host-Associated → Plants → Roots → Bulk Soil	0.94%

Habitat	Taxonomy	Distribution
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	23.58%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	18.87%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	16.04%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	14.15%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	10.38%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	4.72%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	4.72%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	4.72%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	1.89%
Unclassified	Host-Associated → Plants → Roots → Bulk Soil → Unclassified	0.94%

Habitat	Taxonomy	Distribution
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	15.09%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	11.32%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	10.38%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	6.60%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	6.60%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	4.72%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	4.72%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	4.72%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	4.72%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	3.77%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	3.77%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	3.77%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	2.83%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	1.89%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	1.89%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	1.89%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	1.89%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	0.94%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	0.94%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.94%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.94%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.94%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	0.94%
Corn, Switchgrass And Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.94%
Populus Endosphere	Host-Associated → Plants → Roots → Bulk Soil → Unclassified → Populus Endosphere	0.94%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	0.94%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.94%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004156	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300004480	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 4	Environmental	Open in IMG/M
3300005163	Soil and rhizosphere microbial communities from Laval, Canada - mgHMB	Environmental	Open in IMG/M
3300005184	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_120	Environmental	Open in IMG/M
3300005186	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_125	Environmental	Open in IMG/M
3300005327	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG	Host-Associated	Open in IMG/M
3300005331	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG	Host-Associated	Open in IMG/M
3300005337	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG	Environmental	Open in IMG/M
3300005339	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG	Host-Associated	Open in IMG/M
3300005344	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG	Host-Associated	Open in IMG/M
3300005347	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG	Host-Associated	Open in IMG/M
3300005353	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG	Host-Associated	Open in IMG/M
3300005366	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG	Host-Associated	Open in IMG/M
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental	Open in IMG/M
3300005455	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG	Host-Associated	Open in IMG/M
3300005534	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen07_05102014_R1	Environmental	Open in IMG/M
3300005539	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2	Host-Associated	Open in IMG/M
3300005548	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG	Host-Associated	Open in IMG/M
3300005568	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_152	Environmental	Open in IMG/M
3300005575	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_151	Environmental	Open in IMG/M
3300005577	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2	Host-Associated	Open in IMG/M
3300005578	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2	Host-Associated	Open in IMG/M
3300005587	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_103	Environmental	Open in IMG/M
3300005617	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2	Host-Associated	Open in IMG/M
3300005719	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2	Host-Associated	Open in IMG/M
3300005834	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2	Host-Associated	Open in IMG/M
3300005844	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2	Host-Associated	Open in IMG/M
3300006046	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_101	Environmental	Open in IMG/M
3300006195	Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1	Host-Associated	Open in IMG/M
3300006846	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4	Host-Associated	Open in IMG/M
3300007004	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Compost	Environmental	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300009177	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG	Host-Associated	Open in IMG/M
3300009551	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG	Host-Associated	Open in IMG/M
3300010040	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot55	Environmental	Open in IMG/M
3300010045	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot61	Environmental	Open in IMG/M
3300010364	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_09212015	Environmental	Open in IMG/M
3300012208	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaG	Environmental	Open in IMG/M
3300012209	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_80_16 metaG	Environmental	Open in IMG/M
3300012210	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_60_16 metaG	Environmental	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012353	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_80_16 metaG	Environmental	Open in IMG/M
3300012469	Combined assembly of Soil carbon rhizosphere	Host-Associated	Open in IMG/M
3300012923	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaG	Environmental	Open in IMG/M
3300012955	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_216_MG	Environmental	Open in IMG/M
3300012960	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MG	Environmental	Open in IMG/M
3300013100	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG	Host-Associated	Open in IMG/M
3300013102	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG	Host-Associated	Open in IMG/M
3300013307	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG	Host-Associated	Open in IMG/M
3300019888	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L1c2	Environmental	Open in IMG/M
3300021363	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L3c2	Environmental	Open in IMG/M
3300025321	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025901	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4 (SPAdes)	Host-Associated	Open in IMG/M
3300025904	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes)	Host-Associated	Open in IMG/M
3300025909	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025912	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025917	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025919	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025920	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025924	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025931	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025945	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025972	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025981	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026041	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026088	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026116	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026319	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_60cm (SPAdes)	Environmental	Open in IMG/M
3300026527	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_151 (SPAdes)	Environmental	Open in IMG/M
3300026550	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_145 (SPAdes)	Environmental	Open in IMG/M
3300027288	Soil and rhizosphere microbial communities from Laval, Canada - mgHMC (SPAdes)	Environmental	Open in IMG/M
3300028380	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300031740	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05	Environmental	Open in IMG/M
3300032080	Soil microbial communities from Southern Great Plains, Lamont, Oklahoma, United States - SGP_1_2016	Environmental	Open in IMG/M
3300034268	Forest soil microbial communities from Eldorado National Forest, California, USA - SNFC_MG_FRD_1.2	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Ga0062593_1007352811	3300004114	Soil	MTKDQMRNEHDRLQGVLEAHEARAVASSIPDHHNGLRQRIAGLALKLADPKVH*
Ga0062593_1015345391	3300004114	Soil	MLSAKHGGKMTKDQIRGERDRLQGVLEAYEAQAAVSSLPGRHDGLRQRIAGLALKLAETGVA*
Ga0062589_1015932382	3300004156	Soil	MTKDQMRNEHDRLQGVLEAHEARAVASSIPDHHNGLRQRIAGLALKLADPRVH*
Ga0063356_1029775281	3300004463	Arabidopsis Thaliana Rhizosphere	MTKDQMRNEHDRLQGVLEAHEARAVASSISDHHNGLRQRIAGLALKLADPRVH*
Ga0063356_1062579541	3300004463	Arabidopsis Thaliana Rhizosphere	MTKDQMRDEHDRLLGVLEAHEARAVASSNSGHHDGLRQRIAGLALKLADPRVH*
Ga0062592_1012957071	3300004480	Soil	MLSAKHGGKTTKDQIRGERDRLQGVLEAYEGQAAVSSLPGRHDGLRQRIAGLALKLAET
Ga0066823_100911581	3300005163	Soil	MTKDQIRDEHDRLQGLLEAYEARAVASSIPDHHAGLRQRIAGLAMKLAETNVA*
Ga0066671_110144721	3300005184	Soil	DDMTNDQIRGEHDRLQVVLEAYEARAVADSIPDHHAGLRQRIAALALKLEAKDVA*
Ga0066676_101701714	3300005186	Soil	KDQIRGEHDRLQGLLEAYVARAVADSIPDHHAGLRQRIAGLAMKLAETNVA*
Ga0066676_102628551	3300005186	Soil	GHRRVDFPIGASRSNMLGTKHEDEMTKDQMRGEHDRLQAVLGAYEARAVADSIPDHHAGLRQRIAALALKLTEKDVA*
Ga0070658_106636921	3300005327	Corn Rhizosphere	MFGTTRGDEMTNDQIRGEHDRLQVLLEAYEARAIADSVPDHHAGLRQRIAGLALKLAEKDVA*
Ga0070658_112422422	3300005327	Corn Rhizosphere	MLGPKHEDEMTKDQMRGEHDRLQAVLEAHEARAVASSIPDHHAGLRQRIAALALKLTEKNVA*
Ga0070670_1009290262	3300005331	Switchgrass Rhizosphere	MTKDQIRGEHDRLQGLLEAYQARAVANSVTDHHAGLRQRIAGLALKLAETNVA*
Ga0070682_1004254401	3300005337	Corn Rhizosphere	ADRSSMFGTTRGDEMTNDQIRGEHDRLQVLLEAYEARAIADSVPDHHAGLRQRIAGLALKLAEKDVA*
Ga0070682_1010591161	3300005337	Corn Rhizosphere	MLGPKHEDEMTKDQMRGEHDRLQAVLEAHEARAVASSIPDHHAGLRQRIAALALKLEEKNVA*
Ga0070660_1000620821	3300005339	Corn Rhizosphere	MTNDQIRGEHDRLQVVLEAYEARAVADSIPDHHAGLRQRIAALALKLAEKGAA*
Ga0070660_1010755062	3300005339	Corn Rhizosphere	MTNDQIRGEHDRLQVVLEVYEARAVADSIPDHHAGLRQRIAALALKLTEKDVA*
Ga0070660_1014879821	3300005339	Corn Rhizosphere	MTKDQIRGEHDRLQLVLEGYEARAVATSIPDHHAGLRQRIAALALKLTEKNVA*
Ga0070661_1000283823	3300005344	Corn Rhizosphere	MTKDQMRGEHDRLQAVLEAHEARAVASSIPDHHAGLRQRIAALALKLEEKNVA*
Ga0070661_1001343442	3300005344	Corn Rhizosphere	MTKDQIRGEHDRLQLVLEGYEARAVATSIPDHHAGLRQRIAALALKLAEKDVA*
Ga0070661_1007174891	3300005344	Corn Rhizosphere	QMTNDQIRGEHDRLQVVLEAYEARAVADSIPDHHAGLRQRIAALALKLTEKDVA*
Ga0070668_10000004632	3300005347	Switchgrass Rhizosphere	MTRDQMQDEHDRLQSVLEAYEARAAANAIPDHHEGLKRRIAGLAEKLAHNP*
Ga0070668_1012983562	3300005347	Switchgrass Rhizosphere	MTRDQMQNEHDRLLAVLEAYEARAAASSIPDHHVGLKRRIEGLAQKLAHDA*
Ga0070669_1001519974	3300005353	Switchgrass Rhizosphere	MLSAKNGFRMTKDQIRGEHDRLQGLLETYEARAVANSVTDHHAGLRQRIAGLALKLAETNVA*
Ga0070659_1007466901	3300005366	Corn Rhizosphere	MTKDQIRGEHDRLQLVLEGYEARAVASSIPDHHAGLRQRIAALALKLTEKNVA*
Ga0070708_1015874012	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	MTKDQMRDEHDRLQALLEAYEARALADSIPDHHHGLRQRIAGLALKLAETNRA*
Ga0070663_1001032092	3300005455	Corn Rhizosphere	MTKDQMRGEHDRLQAVLEAHEARAVASSIPDHHAGLRQRIAALALKLTEKNVA*
Ga0070735_103825161	3300005534	Surface Soil	MTKDQIRGEHDRLQGLLEAYEARAVANSITDHHAGLRQRIAALALKLTETNVA*
Ga0068853_1002173114	3300005539	Corn Rhizosphere	MTNDQIRGEHDRLQVVLEAYEARAVADSIPDHHAGLRQRIAALALKLAEKDVA*
Ga0070665_1013707623	3300005548	Switchgrass Rhizosphere	MTKDQMRDEHDRLQGVLEAYEARAVASSIPDHHHGLRQRIAGLALKLAETNVA*
Ga0066703_103091982	3300005568	Soil	MTRDQIRDEHDRLQGLLEAYEARAEANSVVDHHAGLRQRIAGLAMKLQDD*
Ga0066703_107875052	3300005568	Soil	MTNDQIRGEHDRLQGLLEAYEARAEANSIADHHAGLRQRIAGLALKLEGNPA*
Ga0066702_107573972	3300005575	Soil	TKHEDEMTKDQMRGEHDRLQAVLGAYEARAVADSIPDHHAGLRQRIAALALKLTEKDVA*
Ga0068857_1001164632	3300005577	Corn Rhizosphere	MTKDQIRGEHDRLQGLLEAYQARAVANSVTDHHAGLRQRIAGLALKLVETNVA*
Ga0068857_1015210312	3300005577	Corn Rhizosphere	MNKDQMRGECDRLQGVLEAYEARAVATSVQDHHNGLRQRIASLEQKLADLDRA*
Ga0068854_10003055210	3300005578	Corn Rhizosphere	MNNDQIRGERDRLQVVLEAYEARPVADSIPDHHAGLRQRIAALALKLAEKDVA*
Ga0068854_1001140472	3300005578	Corn Rhizosphere	MLGPKHEDEMTKDQMRGEHDRLQAVLEAHEARAVAISIPDHHAGLRQRIAALARKLEEKNVA*
Ga0066654_102049913	3300005587	Soil	MTKDQIRGEHDRLQGVLDVHEARALANSIPDHHDGLRQRIAALALKLAEANVA*
Ga0068859_1001051572	3300005617	Switchgrass Rhizosphere	TRDQMQDEHDRLQSVLEAYEARAAANAIPDHHEGLKRRIAGLAEKLAHNP*
Ga0068861_1024447462	3300005719	Switchgrass Rhizosphere	MDRAQMRGECDRMQGLLEAYEARAVANSVVDHHDGLRLRLASLEQRLAELEGA*
Ga0068851_108530961	3300005834	Corn Rhizosphere	MFGTTRGDEMTNDQIRGEHDRLQVLLEAYEARAIADSVPDHHAGLRQRI
Ga0068862_1014096503	3300005844	Switchgrass Rhizosphere	MTRDQMQNEHDRLLAVLEAYEARAAASSIPDHHVGLKRRIEGLAQKLAH
Ga0066652_1001165095	3300006046	Soil	MTRDQMRDEHDRLQEVLEAHEARAVASSMPDHHDGLRQRIAGLALKLAEANPA*
Ga0066652_1006980462	3300006046	Soil	MTKDQIRGEHDRLQGLLDAYEAVAVASSVPDHHAGLRQRIAGLALRLAEMNVA*
Ga0075366_102412571	3300006195	Populus Endosphere	MTKDQIRGEHDRLQGLLETYEARAVANSVTDHHAGLRQRIAGLALKLAETNVA*
Ga0075430_1000667953	3300006846	Populus Rhizosphere	MISGFASYMLKGKHEAEMTEDQMRKEHDRLQGVLEAHEARALANSVPDHHDGLRLRIAALAQKLVQTNNS*
Ga0079218_132072132	3300007004	Agricultural Soil	MTEDQLRREYDRLQAVLEAYEARALANSIPDHHDGLRRRIAALAEKLGRTNCA*
Ga0066710_1008864593	3300009012	Grasslands Soil	MLSGKHEGEMTKDQIRAEHDRLQAVLEAYEARALANSIPDHHDGLRQRIAALARKLAETNNA
Ga0066709_1017261122	3300009137	Grasslands Soil	MLSGKHEGEMTKDQIRAEHDRLQAVLEAYEARALANSIPDHHDGLRQRIAALARKLAETNNA*
Ga0066709_1022185821	3300009137	Grasslands Soil	QIRAEHDRLQAVLEAYEARALANSIPDHHDGLRQRIAALARKLAETNNA*
Ga0105248_114996031	3300009177	Switchgrass Rhizosphere	MQDEHDRLQSVLEAYEARAAANAIPDHHEGLKRRIAGLAEKLAHNP*
Ga0105238_112705821	3300009551	Corn Rhizosphere	TRGDEMTNDQIRGEHDRLQVLLEAYEARAIADSVPDHHAGLRQRIAGLALKLAEKDVA*
Ga0126308_100923843	3300010040	Serpentine Soil	MTKDHMRDEHDRLQGVLEVHEAGAVAGSIPDHHDGLRQRIAGLALKLAETNVA*
Ga0126311_118743091	3300010045	Serpentine Soil	MTKDQMRDEHDRLQGVLEAHEARAVAGSIPDHHDGLRQRIAGLALKLAETNVA*
Ga0134066_104559941	3300010364	Grasslands Soil	EHDRLQGLLEAYEARAVADSIPDHHAGLRQRIAGLAMKLAETNVA*
Ga0137376_112936032	3300012208	Vadose Zone Soil	MTKDQLRGEHDRLQGVLEAHEARAVASSIPDHHVGLRQRIAALALKLAETNVA*
Ga0137379_109099562	3300012209	Vadose Zone Soil	MTRDQMRGEHDRLQGVLEAHEARAIASSIPDHHAGLRQRIAGLALKLAETNGA*
Ga0137378_117286822	3300012210	Vadose Zone Soil	MTKDQIRDEHDRLQGVLDAHEARAVASSVPDHHDGLRQRIAAFALKLAETDVA*
Ga0150985_1013850163	3300012212	Avena Fatua Rhizosphere	MTKDQMRDEHDRLQGVLEAYEARAVAGSIPDHHDGLRQRIAAFAMKLAETNIA*
Ga0150985_1090016003	3300012212	Avena Fatua Rhizosphere	MGDEMTNDQIRGEHDRLQVLLEAYQARAAADSIPDHHAGLRQRIAGLALKLAEKDVA*
Ga0150985_1157861171	3300012212	Avena Fatua Rhizosphere	DQIRGEHDRLQGLLEGYEARAVADSTVDHHAGLRQRIAAFALKLADPNIA*
Ga0150985_1161508072	3300012212	Avena Fatua Rhizosphere	MTKDQIRDEHDRLQGVLEAHEARAAASSIRDHHDGLRERIAGLALKLADTNVV*
Ga0150985_1195717273	3300012212	Avena Fatua Rhizosphere	MTNGQIRGEHDRLQVLLEAYEPRAIADSVPDHHAGLGQRIAALALKLAEKDVA*
Ga0137367_107415212	3300012353	Vadose Zone Soil	MLSGKHEGEMTKDQIRGEHDRLQAVLEAYEARAVANSIPDHHDGLRQRIAGLARKLAETNNA*
Ga0150984_1014197853	3300012469	Avena Fatua Rhizosphere	MTNDQIRGEHDRLQVLLEAYEARAAADSIPDHHAGLRQRIAALALKLAEKDVA*
Ga0150984_1072468862	3300012469	Avena Fatua Rhizosphere	MSKDQIRDECDRLQGLLEAYEARAVANSITDHHAGLRQRIAGLALKLADQNVA*
Ga0137359_112740132	3300012923	Vadose Zone Soil	MEAGMTKDQIRGEHDRLQGVLEAYEARAVASSIVDHHAGLRQRIAGLALKLETYVA*
Ga0164298_116556371	3300012955	Soil	MLKAGHGDEMTNDQIRGEHDRLQMVLEAYEARAVADSIPDHHAGLRQRIAALALKLTEKNVA*
Ga0164301_106197982	3300012960	Soil	MTKDQMRNEHDRLQGVLEVHEARAVACSIPDHHDGLRQRIAGLALKLAETNIA*
Ga0157373_100812071	3300013100	Corn Rhizosphere	NDQIRGERDRLQVVLEAYEARPVADSIPDHHAGLRQRIAALALKLAEKDVA*
Ga0157373_101094892	3300013100	Corn Rhizosphere	MLGPKHEDEMTKDQMRGEHDRLQAVLEAHEARAVAISIPDHHAGLRQRIAALALKLEEKNVA*
Ga0157373_101184732	3300013100	Corn Rhizosphere	MTNDQIRGEHDRLQVVLEAYEALAVADSIPDHHAGLRQRIAALALKLAEKDVA*
Ga0157373_103041414	3300013100	Corn Rhizosphere	MTNDQIRGEHDRLQVLLEAYEARAIADSVPDHHAGLRQRIAGLALKLAEKDV
Ga0157371_103417912	3300013102	Corn Rhizosphere	MTNDQIRGEHDRLQVVLEAYEALAVADSIPDHHAGLRQRIAALALKLTEKDVA*
Ga0157372_101982111	3300013307	Corn Rhizosphere	MTNDQIRGEHDRLQVVLEAYEARAVADSIPDQHTGLRQRIAALALKLAEKGAA*
Ga0157372_103827711	3300013307	Corn Rhizosphere	EMNNDQIRGERDRLQVVLEAYEARPVADSIPDHHAGLRQRIAALALKLAEKDVA*
Ga0193751_10605431	3300019888	Soil	GVLEAHEARAFASSIPDHHNGLRQRIAGLAMRLAETDFA
Ga0193699_101363571	3300021363	Soil	DEMTNDQIRGEHDRLQGLLEAYEARAVAGVPDHHHGLRQRIAAFALKLAEINVA
Ga0207656_105516461	3300025321	Corn Rhizosphere	MFGTTRGDEMTNDQIRGEHDRLQVLLEAYEARAIADSVPDHHAGLRQRIAGLALK
Ga0207688_108077702	3300025901	Corn, Switchgrass And Miscanthus Rhizosphere	MTKDQIRGEHDRLQGLLEAYQARAVANSVTDHHAGLRQRIAGLALKLAETNVA
Ga0207647_100778422	3300025904	Corn Rhizosphere	MLGPKHEDEMTKDQMRGEHDRLQAVLEAHEARAVASSIPDHHAGLRQRIAALALKLEEKNVA
Ga0207647_103150652	3300025904	Corn Rhizosphere	MTNDQIRGEHDRLQVLLEAYEARAIADSVPDHHAGLRQRIAGLALKLAEKDVA
Ga0207705_1000137610	3300025909	Corn Rhizosphere	MTNDQIRGEHDRLQVVLEAYEARAVADSIPDHHAGLRQRIAALALKLTEKDVA
Ga0207705_104646972	3300025909	Corn Rhizosphere	MTNDQIRGEHDRLQVVLEAYEARAVADSIPDHHAGLRQRIAALALKLAEKGAA
Ga0207707_107358132	3300025912	Corn Rhizosphere	MFGTTRGDEMTNDQIRGEHDRLQVVLEAYEARAVADSIPDHHAGLRQRIAALALKLAEKGAA
Ga0207660_116161871	3300025917	Corn Rhizosphere	MTNDQIRGEHDRLQVVLEVYEARAVADSIPDHHAGLRQRIAALALKLTEKDVA
Ga0207657_100803203	3300025919	Corn Rhizosphere	MTNDQIRGEHDRLQVVLEAYEARAVADSIPDHHAGLRQRIAALALKLAEKDVA
Ga0207649_100536534	3300025920	Corn Rhizosphere	MNNDQIRGERDRLQVVLEAYEARPVADSIPDHHAGLRQRIAALALKLAEKDVA
Ga0207649_102550133	3300025920	Corn Rhizosphere	MTNDQIRGEHDRLQVVLEAYEALAVADSIPDHHAGLRQRIAALALKLAEKDVA
Ga0207694_115152592	3300025924	Corn Rhizosphere	MTNDQIRGEHDRLQVVLEAYEARAVADSIPDHHAGLRQRIAGLALKLAEKDVA
Ga0207644_10000025133	3300025931	Switchgrass Rhizosphere	MTRDQMQDEHDRLQSVLEAYEARAAANAIPDHHEGLKRRIAGLAEKLAHNP
Ga0207679_104202772	3300025945	Corn Rhizosphere	MLGPKHEDEMTKDQMRGEHDRLQAVLEAHEARAVASSIPDHHAGLRQRIAALALKLTEKNVA
Ga0207668_105133022	3300025972	Switchgrass Rhizosphere	MTRDQMQNEHDRLLAVLEAYEARAAASSIPDHHVGLKRRIEGLAQKLAHDA
Ga0207640_105146071	3300025981	Corn Rhizosphere	LRIGAGRSNMLGPKHEDEMTKDQMRGEHDRLQAVLEAHEARAVAISIPDHHAGLRQRIAALARKLEEKNVA
Ga0207639_115804701	3300026041	Corn Rhizosphere	MNNDQIRGERDRLQVVLEAYEARPVADSIPDHHAGLRQRIAALALK
Ga0207641_100566033	3300026088	Switchgrass Rhizosphere	MTKDQIRGEHDRLQGLLEAYQARAVANSVTDHHAGLRQRIAGLALKLVETNVA
Ga0207674_107096902	3300026116	Corn Rhizosphere	RIGASRSNMLGPKHEDEMTKDQMRGEHDRLQAVLEAHEARAVASSIPDHHAGLRQRIAALALKLEEKNVA
Ga0209647_10247106	3300026319	Grasslands Soil	MTKDQIRGEHDRLLGLLEAYEARAVADSVPDNHAGLRQRIAGLAMKLADPNVA
Ga0209059_11948572	3300026527	Soil	VTKDQIRGEHDRLQGLLEAYEARAVADSIPDHHAGLRQRIAGLAMKLAETNVA
Ga0209474_101076443	3300026550	Soil	MTKDQIRGEHDRLLGVLEAHEARAVANSIPDHHAGLRQRIAGLALKLAETNGA
Ga0208525_10136513	3300027288	Soil	MTKDQIRDERDRLQGLLEAYEADADAESMADHHAGLRQRIAGLAMKLAATPDP
Ga0208525_10446401	3300027288	Soil	MTKDQIRDEHDRLQGLLEAYEARAVASSIPDHHAGLRQRIAGLAMKLAETNVA
Ga0268265_100654531	3300028380	Switchgrass Rhizosphere	GAMTRDQMQDEHDRLQSVLEAYEARAAANAIPDHHEGLKRRIAGLAEKLAHNP
Ga0307468_1015232882	3300031740	Hardwood Forest Soil	MTKDQIRDERDRLQGLLEAYEANANADSMPDHHVGLRQRIAGLAMKLAGTPDP
Ga0326721_101970252	3300032080	Soil	MTKDQIRGEHDRLQGVLEAHQARAAALSMPDHHDGLRQRIAGLALKLAEANVA
Ga0372943_0035861_484_645	3300034268	Soil	MTKDQIRGEHDRLQGLLEAYEARAVANSTTDHHAGLRQRIAGLAMKLAEKNVA

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F094086

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Structural matches with SCOPe domains

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences