Scaffold Ga0207645_10128610

Overview

Basic Information

• Taxon OID: 3300025907
• Scaffold ID: Ga0207645_10128610
• Source Dataset Name: Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1648
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan, Kellogg Biological Station
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015747	Metagenome	252	Y
F036726	Metagenome	169	N
F061606	Metagenome	131	N
F104385	Metagenome / Metatranscriptome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0207645_101286101	F036726	N/A	VARRDSVDEKKEKIMELDANVANELVELIKTRNGLQDSHVATFELHWRQSTFDDALDKAVKLSRAQAHEVWRALQLLVSRESLVGRPAAVVELAMQFNPFPVTWRVIADKALEYEHLAVKQKR
Ga0207645_101286102	F061606	N/A	MDQYPPVNESGLVTRENSLEKVLALSTSQAHEIWHAMQLIAANGSLEGLPRPVVQIAMELNYFLNAWKVVAEKAVLHERLIGKPRRRGFWV
Ga0207645_101286103	F015747	N/A	MDNNSQVTGLRALVANVMLERARELSDLQACEVWRLIQLIDTGASPKSVRPATLQLAMDFNRFPHARRVIEEKALGHERATGTGGNCDRSFSTN
Ga0207645_101286105	F104385	GAG	MRVDSNIAGAAAPTNRGMLAFGHAISTAFHVTALYFGAAYLLITIPLHLIYTAVALAKQDRAPRVRIHV