Metagenome / Metatranscriptome Family F104385

Basic Information
Family ID	F104385
Family Type	Metagenome / Metatranscriptome
Number of Sequences	100
Average Sequence Length	78 residues
Representative Sequence	MRVDINIAGAAPTNRGMLAFGHAISTAFHVTALYFGAAYLLITIPVHLIYTAVALAKQDRAPRVRIHVADVAPDGLLP
Number of Associated Samples	80
Number of Associated Scaffolds	100

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	87.50 %
% of genes near scaffold ends (potentially truncated)	9.00 %
% of genes from short scaffolds (< 2000 bps)	17.00 %
Associated GOLD sequencing projects	67
AlphaFold2 3D model prediction	No

Most Common Taxonomy
Group	Unclassified (90.000 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere (17.000 % of family members)
Environment Ontology (ENVO)	Unclassified (68.000 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (88.000 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 46.15% β-sheet: 0.00% Coil/Unstructured: 53.85%
Feature Viewer

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Pfam ID	Name	% Frequency in 100 Family Scaffolds
PF02518	HATPase_c	7.00
PF01266	DAO	3.00
PF13365	Trypsin_2	2.00
PF12244	DUF3606	2.00
PF03372	Exo_endo_phos	2.00
PF13180	PDZ_2	1.00
PF13692	Glyco_trans_1_4	1.00
PF02405	MlaE	1.00
PF00565	SNase	1.00
PF13683	rve_3	1.00

COG ID	Name	Functional Category	% Frequency in 100 Family Scaffolds
COG0767	Permease subunit MlaE of the ABC-type intermembrane phospholipid transporter Mla	Cell wall/membrane/envelope biogenesis [M]	1.00

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	90.00 %
All Organisms	root	All Organisms	10.00 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	90.00 %
cellular organisms	root	All Organisms → cellular organisms	10.00 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	90.00 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	10.00 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	90.00 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	2.00 %
Nitrospirae	phylum	All Organisms → cellular organisms → Bacteria → Nitrospirae	2.00 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	90.00 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1.00 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1.00 %
Nitrospira	class	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira	1.00 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	90.00 %
unclassified Betaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria	1.00 %
Nitrospirales	order	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales	1.00 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1.00 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	90.00 %
Nitrospiraceae	family	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae	1.00 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1.00 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1.00 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	90.00 %
Nitrospira	genus	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira	1.00 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1.00 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1.00 %

Scaffold	Taxonomy	Length	IMG/M Link
3300004157\|Ga0062590_102531625	Not Available	544	Open in IMG/M
3300005456\|Ga0070678_101436781	Not Available	645	Open in IMG/M
3300005539\|Ga0068853_101575212	Not Available	636	Open in IMG/M
3300005615\|Ga0070702_100111989	Not Available	1694	Open in IMG/M
3300005840\|Ga0068870_11036431	Not Available	587	Open in IMG/M
3300009011\|Ga0105251_10468430	Not Available	586	Open in IMG/M
3300009553\|Ga0105249_10281008	Not Available	1662	Open in IMG/M
3300010147\|Ga0126319_1626821	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	660	Open in IMG/M
3300013308\|Ga0157375_12605131	All Organisms → cellular organisms → Bacteria → Nitrospirae	604	Open in IMG/M
3300014326\|Ga0157380_10277131	Not Available	1532	Open in IMG/M
3300014969\|Ga0157376_10096605	Not Available	2572	Open in IMG/M
3300018067\|Ga0184611_1028524	Not Available	1773	Open in IMG/M
3300018476\|Ga0190274_11001314	Not Available	910	Open in IMG/M
3300019362\|Ga0173479_10433716	Not Available	644	Open in IMG/M
3300022756\|Ga0222622_10015583	All Organisms → cellular organisms → Bacteria	3751	Open in IMG/M
3300025893\|Ga0207682_10003800	All Organisms → cellular organisms → Bacteria	6482	Open in IMG/M
3300025899\|Ga0207642_10026780	Not Available	2352	Open in IMG/M
3300025907\|Ga0207645_10128610	Not Available	1648	Open in IMG/M
3300025908\|Ga0207643_10002104	All Organisms → cellular organisms → Bacteria	10971	Open in IMG/M
3300025920\|Ga0207649_10336312	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira	1114	Open in IMG/M
3300025925\|Ga0207650_10317572	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1275	Open in IMG/M
3300025926\|Ga0207659_10373479	All Organisms → cellular organisms → Bacteria	1188	Open in IMG/M
3300025940\|Ga0207691_10018402	All Organisms → cellular organisms → Bacteria	6620	Open in IMG/M
3300026118\|Ga0207675_100011051	All Organisms → cellular organisms → Bacteria	8456	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Host-Associated	Host-Associated	74.00%
Environmental	Environmental	26.00%

Habitat	Taxonomy	Distribution
Plants	Host-Associated → Plants	74.00%
Terrestrial	Environmental → Terrestrial	21.00%
Aquatic	Environmental → Aquatic	5.00%

Habitat	Taxonomy	Distribution
Rhizosphere	Host-Associated → Plants → Rhizosphere	43.00%
Rhizoplane	Host-Associated → Plants → Rhizoplane	30.00%
Soil	Environmental → Terrestrial → Soil	21.00%
Sediment	Environmental → Aquatic → Sediment	3.00%
Freshwater	Environmental → Aquatic → Freshwater	2.00%
Roots	Host-Associated → Plants → Roots	1.00%

Habitat	Taxonomy	Distribution
Soil	Host-Associated → Plants → Rhizosphere → Soil	30.00%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	25.00%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	13.00%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	13.00%
Loam	Environmental → Terrestrial → Soil → Loam	8.00%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	4.00%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	3.00%
Sediment	Environmental → Aquatic → Freshwater → Sediment	1.00%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	1.00%
Soil	Host-Associated → Plants → Rhizoplane → Soil	1.00%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	1.00%

Habitat	Taxonomy	Distribution
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	30.00%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	25.00%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	13.00%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	8.00%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	8.00%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	4.00%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	3.00%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	3.00%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	1.00%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	1.00%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	1.00%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	1.00%
Unclassified	Host-Associated → Plants → Rhizoplane → Soil → Unclassified	1.00%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	1.00%

Habitat	Taxonomy	Distribution
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	17.00%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	11.00%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	8.00%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	6.00%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	5.00%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	4.00%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	4.00%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	4.00%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	4.00%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	3.00%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Miscanthus Rhizosphere	3.00%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	3.00%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	3.00%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	2.00%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	2.00%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere	2.00%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Corn, Switchgrass And Miscanthus Rhizosphere	2.00%
Corn, Switchgrass And Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	2.00%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	2.00%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	2.00%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	1.00%
Soil	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil	1.00%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	1.00%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	1.00%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	1.00%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	1.00%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	1.00%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	1.00%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere	1.00%
Switchgrass Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere	1.00%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	1.00%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000953	Soil microbial communities from Great Prairies - Kansas Corn soil	Environmental	Open in IMG/M
3300001991	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2	Host-Associated	Open in IMG/M
3300004157	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2	Environmental	Open in IMG/M
3300005290	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 1: eDNA_1	Host-Associated	Open in IMG/M
3300005293	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1	Host-Associated	Open in IMG/M
3300005294	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 Bulk Soil	Environmental	Open in IMG/M
3300005295	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3	Environmental	Open in IMG/M
3300005328	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG	Host-Associated	Open in IMG/M
3300005330	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG	Environmental	Open in IMG/M
3300005331	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG	Host-Associated	Open in IMG/M
3300005333	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG	Host-Associated	Open in IMG/M
3300005334	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2	Host-Associated	Open in IMG/M
3300005338	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2	Host-Associated	Open in IMG/M
3300005343	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG	Environmental	Open in IMG/M
3300005347	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG	Host-Associated	Open in IMG/M
3300005354	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG	Host-Associated	Open in IMG/M
3300005355	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG	Host-Associated	Open in IMG/M
3300005364	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG	Host-Associated	Open in IMG/M
3300005367	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG	Host-Associated	Open in IMG/M
3300005438	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-2 metaG	Environmental	Open in IMG/M
3300005441	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG	Environmental	Open in IMG/M
3300005455	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG	Host-Associated	Open in IMG/M
3300005456	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG	Host-Associated	Open in IMG/M
3300005466	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3L metaG	Environmental	Open in IMG/M
3300005539	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2	Host-Associated	Open in IMG/M
3300005548	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG	Host-Associated	Open in IMG/M
3300005578	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2	Host-Associated	Open in IMG/M
3300005615	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-3 metaG	Environmental	Open in IMG/M
3300005618	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2	Host-Associated	Open in IMG/M
3300005719	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2	Host-Associated	Open in IMG/M
3300005840	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2	Host-Associated	Open in IMG/M
3300005842	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2	Host-Associated	Open in IMG/M
3300005844	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2	Host-Associated	Open in IMG/M
3300009011	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaG	Host-Associated	Open in IMG/M
3300009098	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG	Host-Associated	Open in IMG/M
3300009553	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG	Host-Associated	Open in IMG/M
3300010147	Soil microbial communities from California, USA to study soil gas exchange rates - BB-CA-RED metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010397	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-4	Environmental	Open in IMG/M
3300010403	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3	Environmental	Open in IMG/M
3300013296	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG	Host-Associated	Open in IMG/M
3300013308	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG	Host-Associated	Open in IMG/M
3300014325	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG	Host-Associated	Open in IMG/M
3300014326	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG	Host-Associated	Open in IMG/M
3300014745	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaG	Host-Associated	Open in IMG/M
3300014969	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300017792	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG	Host-Associated	Open in IMG/M
3300018067	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_5_coex	Environmental	Open in IMG/M
3300018476	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 531 T	Environmental	Open in IMG/M
3300019362	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S104-311B-1 (version 2)	Environmental	Open in IMG/M
3300021082	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_5_coex redo	Environmental	Open in IMG/M
3300022756	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_b1	Environmental	Open in IMG/M
3300025271	Switchgrass rhizosphere bulk soil microbial communities from Kellogg Biological Station, Michigan, USA, with spike-in - S5 (SPAdes)	Environmental	Open in IMG/M
3300025893	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025899	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025901	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4 (SPAdes)	Host-Associated	Open in IMG/M
3300025903	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025904	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes)	Host-Associated	Open in IMG/M
3300025907	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025908	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025920	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025923	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025925	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025926	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025930	Switchgrass rhizosphere bulk soil microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes)	Environmental	Open in IMG/M
3300025931	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025934	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025935	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025938	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025940	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025942	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025960	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025972	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026023	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026067	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026118	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026142	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes)	Host-Associated	Open in IMG/M
3300028380	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300031562	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D3	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI11615J12901_135893111	3300000953	Soil	MRVDMSTAQAAFANRGVLAFGHAIYSAFHITALYFGVAYLLITIPVHLIYTAVALAKQDRWLRVQIHIAHVAPEDSLPLLSRQSR*
JGI24743J22301_101296381	3300001991	Corn, Switchgrass And Miscanthus Rhizosphere	MRVDINIAGAAPTKRGMLAFGHAISTAFHVTALYFGAAYLLITIPVHLIYTAVALAKQXRAPRVRIHVAXVAPDGLLP*
Ga0062590_1025316251	3300004157	Soil	MSIRVAGAAPANRGMLGFGHAIFTIFHVTALYSSAPYLLITIPLHLIYTAAASATQDRAPRARMHVADVAP
Ga0065712_100229582	3300005290	Miscanthus Rhizosphere	MRVDISIAGAAPTKRGMLAFGHAISTAFHVTALYFGAAYLLITIPVHLIYTAVALAKQDRAPRVRIHVADVAPDGLLP*
Ga0065712_100265002	3300005290	Miscanthus Rhizosphere	MRVDISTAQAALANRGILAFCHAIYLAFHVTALYFGVAYLLITIPVHLIYTAVALAKQDSLLRVQIRSADVAPQESLPLLSRQSRXSPSVSTKWPLKDWSQAIS*
Ga0065715_104198302	3300005293	Miscanthus Rhizosphere	MCVDINIAGAAPTNRGMLAFGHAISTAFHVTALYFGAAYLLITIPVHLIYTAVALAKQDRAPRVRIHVAEVAPDGLLP*
Ga0065705_107186731	3300005294	Switchgrass Rhizosphere	MRVDSNIAGAAAPTNRGMLAFGHAISTAFHVTALYFGAAYLLITIPVHLIYTAVALAKQDRAPRVRIHVADVAPDGLLP*
Ga0065707_107875111	3300005295	Switchgrass Rhizosphere	MTISIASAAPANRVMLAFGHAISTTFHVTAVYLGVAYLLITIPVHLIYTAVALAQQDGGPRVRIHVADAAADGSLPLA*
Ga0070676_103352022	3300005328	Miscanthus Rhizosphere	MRVDINIAGAAPTNRGMLAFGHAISTAFHVTALYFGAAYLLITIPVHLIYTAVALAKQDRAPRVRIHVADVAPDGLLP*
Ga0070676_104838182	3300005328	Miscanthus Rhizosphere	MTISIASAAPANRVMLAFGHAIFTAFHVTALYFGVAYLLITIPVHLIYTAVALAQQDGAPRVRIHVADAAADGSLP*
Ga0070690_1000051592	3300005330	Switchgrass Rhizosphere	MCVDINIAGAAPTNRGMLAFGHAISTAFHVTALYFGAAYLLITIPVHLIYTAVALAKQDRAPRVRIHVADVAPDGLLP*
Ga0070670_1003961331	3300005331	Switchgrass Rhizosphere	MRVDISTAQAALANRGILAFCHAIYLAFHVTALYFGVAYLLITIPVHLIYTAVALAKQDSLLRVQIRSADVSPQESLPLLSRQSR*
Ga0070670_1008284292	3300005331	Switchgrass Rhizosphere	MRVDINIAGAAPTKRGMLAFGHAISTAFHVTALYFGAAYLLITIPVHLIYTAVALAKQDRAPRVRIHVADVAPDGLLP*
Ga0070670_1016554871	3300005331	Switchgrass Rhizosphere	MTISIASAAPANRVMLAFGHAIFTTFHVTAVYLGVAYLLITIPVHLIYTAVALAQQDGGPRVRIHVADAAADGSLP*
Ga0070677_100181483	3300005333	Miscanthus Rhizosphere	MRVDISTAQAALANRGILAFCHAIYFAFHVTALYFGVAYLLITIPVHLIYTAVALAKQDSLLRVQIRSADVAPQESLPLLSRQSR*
Ga0068869_1001395331	3300005334	Miscanthus Rhizosphere	MRVDSNIAGAAAPTNRGMLAFGHAISTAFHVTALYFGAAYLLITIPLHLIYTAVALAKQDRAPRVRIHVADVAPDGLLP*
Ga0068868_1003306972	3300005338	Miscanthus Rhizosphere	MRVDINIAGAAPTNRGMLAFGHAISTAFHVTALYFGAAYLLITIPVHLIYTAVALAKQDRAPRVRIHVAEVAPDGLLP*
Ga0070687_1000138724	3300005343	Switchgrass Rhizosphere	MRVDISTAQAALANRGILAFCHAIYLAFHVTALYFGVAYLLITIPVHLIYTAVALAKQDSLLRVQIRSADVAPQDSLPLISQQSR*
Ga0070687_1008495901	3300005343	Switchgrass Rhizosphere	MRVDINIAGAAPTNRGMLAFGHAISTAFHVTALYFGAAYLLITIPVHLIYTAVALAKQDRAPRVRIHVA
Ga0070668_1004432151	3300005347	Switchgrass Rhizosphere	MRVDVSTAQVALANRGILAFCHAIYFAFHVTALYFGVAYLLITIPVHLIYTAVALAKQDSLLRVQIRSADVAPQDSLPLISQQSR*
Ga0070675_1004260311	3300005354	Miscanthus Rhizosphere	MTISNERAAPANRAMLAFGHAISTALHVTALYFDEAYVLITIPAHLIYTAVALAKQDRAPRVRIHVAGVAPDGSPP*
Ga0070671_1000134753	3300005355	Switchgrass Rhizosphere	MRIDISIAGAAPTKRGMLAFGHAISTAFHVTALYFGAAYLLITIPVHLIYTAVALAKQDRAPRVRIHVAEVAPDGLLP*
Ga0070673_1006876663	3300005364	Switchgrass Rhizosphere	MTISIASAAPANRVMLAFGHAISTTFHVTAVYLGVAYLLITIPVHLIYTAVALAQQDGGPRVRIHVADAAADGSLP*
Ga0070667_1001443383	3300005367	Switchgrass Rhizosphere	MRVDISTAQAALANRGILAFCHAIYLAFHVTALYFGVAYLLITIPVHLIYTAVALAKQDSLLRVQIRSADVAPQESLPLLSRQSR*
Ga0070701_100019211	3300005438	Corn, Switchgrass And Miscanthus Rhizosphere	MRVDVSTAQVALANRGILAFCHAIYLAFHVTALYFGVAYLLITIPVHLIYTAVALAKQDSLLRVQIRSADVAPKNHYLCLVDNLDIAIGEHEMAA*
Ga0070701_100609931	3300005438	Corn, Switchgrass And Miscanthus Rhizosphere	MRVDINIAGAATTNRGMLAFGHAISTAFHVTALYFGAAYLLITIPVHLIYTAVALAKQDRAPRVRIHVADVAPDGLLP*
Ga0070700_1000850664	3300005441	Corn, Switchgrass And Miscanthus Rhizosphere	MRVDVSTAQVALANRGILAFCNAIYFAFHVTALYFGVAYLLITIPVHLIYTAVALAKQDSLLRVQIRSADVAPQDSLPLISQQSR*
Ga0070663_1005031952	3300005455	Corn Rhizosphere	MRVDINIAGAAPTNRGMLAFGHAVSTAFHVTALYFGAAYLLITIPVHLIYTAVALAKQDRAPRVRIHVADVAPDGLLP*
Ga0070663_1009974671	3300005455	Corn Rhizosphere	MRVDISTAQAALANRGILAFCHAIYLAFHVTALYFGVAYLLITIPVHLIYTAVALAKQDSLLRVQIRSADVAPQESLPLLVDNLDIAIGEHEMAA*
Ga0070678_1014367811	3300005456	Miscanthus Rhizosphere	MSIRVTVTAPASRGMLEFGHAIFTTFHVTALYSGAPYLLFTIPLHLIYTAAALAKQDSVPRARIHVADVVPDR
Ga0070685_100091796	3300005466	Switchgrass Rhizosphere	MRVDISIAGAAPTKRGMLAFGHAIFTAFHVTALYFGAAYLLITIPVHLIYTAVALAKQDRAPRVRIHVAEVAPDGLLP*
Ga0068853_1015752123	3300005539	Corn Rhizosphere	RGMLAFGHAISTAFHVTALYFGAAYLLITIPVHLIYTAVALAKQDRAPRVRIHVADVAPDGLLP*
Ga0070665_1002167744	3300005548	Switchgrass Rhizosphere	MRVDINIAGAAPTNRGMLAFGHAISTAFHVTALYFGAAYLLITIPLHLIYTAVALAKQDRAPRVRIHVADVAPDGLLP*
Ga0068854_1010342753	3300005578	Corn Rhizosphere	MRVDINIAGAAPTKRGMLAFGHAISTAFHVTALYFGAAYLLITIPVHLIYTAVALAKQDRAPRVRIHVAEVAPDGLLP*
Ga0070702_1001119891	3300005615	Corn, Switchgrass And Miscanthus Rhizosphere	MRVDISIAGAAPTKRGMLAFGHAISTAFHVTALYFGAAYLLITIPVHLIYTAVALAKQDRAPRVRIHVAEVAP
Ga0068864_1007392942	3300005618	Switchgrass Rhizosphere	MPVSIASASLANTGMLGFGHAICTALHVAALYFGAAYLLITIPAHLIYIAVALAKQDRARRVQIHR*
Ga0068861_1018511532	3300005719	Switchgrass Rhizosphere	MRIDISIAGAAPTKRGMLAFGHAISTAFHVTALYFGAAYLLITIPVHLIYTAVALAKQDRAPRVRIHVADVAPDGLLP*
Ga0068870_100346794	3300005840	Miscanthus Rhizosphere	MRVDISIAGAAPTKRGMLAFGHAISTAFHVTALYFGAAYLLITIPVHLIYTAVALAKQDRAPRVRIHVAEVAPDGLLP*
Ga0068870_110364311	3300005840	Miscanthus Rhizosphere	MTISIASAAPANRVMLAFGHAIFTTFHVTAVYLGVAYLLITIPVHLIYTAVALAQQDGGPRVRIHVADAAADGSLPL
Ga0068858_1002082232	3300005842	Switchgrass Rhizosphere	MRVDVSTAQVALANRGILAFCHAIYFAFHVTALYFGVAYLLITIPVHLIYTAVALAKQDSLLRVQIRSADVAPQESLPLLSRQSR*
Ga0068862_1002026621	3300005844	Switchgrass Rhizosphere	VDINIAGAAPTNRGMLAFGHAISTAFHVTALYFGAAYLLITIPVHLIYTAVALAKQDRAPRVRIHVADVAPDGLLP*
Ga0105251_104684301	3300009011	Switchgrass Rhizosphere	MTISIASAAPANRVMLAFGHAIFTAFHVTALYFGVAYLLITIPVHLIYTAVALAQQDGAPRVRIHVADAA
Ga0105245_100328766	3300009098	Miscanthus Rhizosphere	MRVDVSTAQAALANRGILAFCHAIYLAFHVTALYFGVAYLLITIPVHLIYTAVALAKQDSLLRVQIRSADVAPQESLPLLSRQSR*
Ga0105249_102810081	3300009553	Switchgrass Rhizosphere	MRVDSNIAGAAAPTNRGMLAFGHAISTAFHVTALYFGAAYLLITIPLHLIYTAVALAKQDRAPRVRIHVAEVAPDGLLP*
Ga0105249_104591413	3300009553	Switchgrass Rhizosphere	MRVDVSTAQVALANRGILAFCHAIYLAFHVTALYFGVAYLLITIPVHLIYTAVALAKQDSLLRVQIRSADVAPQESLPLLSRQSR*
Ga0126319_16268212	3300010147	Soil	MPVSIASASPANTGMLGFGHAICTALHVAALYFGAAYLLITIPAHLIYIAVALAKQDRARSVRIHVANVAPDDSLP*
Ga0134124_109827441	3300010397	Terrestrial Soil	MRVDISTAQAALANRGILAFFHAIYLAFHVTALYFGVAYLLITIPVHLIYTAVALAKQDSLLRVQIRSADVAPQESLPLLSRQSR*
Ga0134123_102816683	3300010403	Terrestrial Soil	TNRGMLAFGHAISTAFHVTALYFGAAYLLITIPLHLIYTAVALAKQDRAPRVRIHVADVAPDGLLP*
Ga0134123_121875651	3300010403	Terrestrial Soil	MRVDSNIAGAAAPTNRGMLAFGHAISTAFHVTALYFGAAYLLITIPVHLIYTAVALAKQDRAPRVRIHVAEVAHDGLLP*
Ga0157374_100970263	3300013296	Miscanthus Rhizosphere	MRVDIDIAGAAPTNRGMLAFGHAISTAFHVTALYFGAAYLLITIPVHLIYTAVALAKQDRAPRVRIHVAEVAPDGLLP*
Ga0157375_109035891	3300013308	Miscanthus Rhizosphere	MRVDISTAQAALANRGILAFCHAIYLAFHVTALYFGVAYLLITIPVHLIYTAVALAKQDSLLRVQIRSADVAPQESLP
Ga0157375_126051311	3300013308	Miscanthus Rhizosphere	VSIRIAVTAPTSRGMLEFGHAIFTTFHVTALYSGAPYLLFMIPLHLIYTAAALAKQDSVPRARIHVADVVPDRSRT*
Ga0163163_100644403	3300014325	Switchgrass Rhizosphere	MRVDISTAQAALANRGILAFCHAIYLAFHVTALYFGVAYLLITIPVHLIYTAVALAKQDSLLRVQIRSADVAPQESLPLPSRQSR*
Ga0157380_100266947	3300014326	Switchgrass Rhizosphere	MRVDISTAQAALANRDILAFCHAIYLAFHVTALYFGVAYLLITIPVHLIYTAVALAKQDSLLRVQIRSADVAPQESLPLLSRQSR*
Ga0157380_102771314	3300014326	Switchgrass Rhizosphere	MRVDINIAGAATTNRGMLAFGHAISTAFHVTALYFGAAYLLINIPVHLIYTAVALAKQDRAPRVRIHVAEVAPDGLLP*
Ga0157377_103942492	3300014745	Miscanthus Rhizosphere	RGILAFGHAIYSAIHITALYFGVAYLLITIPVHLIYTAVALAKQDRWLRVQIHIAHVAPEDSLPLLSRQSR*
Ga0157376_100966053	3300014969	Miscanthus Rhizosphere	MRVDINIAGAAPTKRGMLAFGHAISTAFHLTALYFGAAYLLITIPVHLIYTAVALAKQDRAPRVRIHVADVAPDGLLP*
Ga0132256_1000610155	3300015372	Arabidopsis Rhizosphere	RVDSNIAGAAAPTNRGMLAFGHAISTAFHVTALYFGAAYLLITIPVHLIYTAVALAKQDRAPRVRIHVAEVAPDGLLP*
Ga0132255_1047182371	3300015374	Arabidopsis Rhizosphere	MRVDINIPGAAPTNRGMLAFGHAISTAFHVTALYFGAAYLLITIPLHLIYTAVALAKQDRAPRVRIHVADVAPDGLLP*
Ga0163161_100620531	3300017792	Switchgrass Rhizosphere	MRVDISTAQAALANRGILAFCHAIYLAFHVTALYFGVAYLLITIPVHLIYTAVALAKQDSLLRVQIRSADVAPQDSLPLISQQSR
Ga0163161_118383021	3300017792	Switchgrass Rhizosphere	MRVDSNIAGAAAPTNRGMLAFGHAISTAFHVTALYFGAAYLLITIPLHLIYTAVALAKQDRAPRVRIHVAEVAPDGLLP
Ga0184611_10285244	3300018067	Groundwater Sediment	MTISIASAAPANRVMLAFGHAIFTTFHVTAVYLGVAYLLITIPVHLIYTAVALAQQDGGPRVRIHVADTAADGSLP
Ga0190274_110013142	3300018476	Soil	MTISIASAAPANRVMLAFGHAIFTTFHVTAVYLGVAYLLITIPVHLIYTAVALAQQDGGPRVRIHVADAAADGSLP
Ga0173479_104337162	3300019362	Soil	MSIRVAGAAPANRGMLGFGHAIFTIFHVTALYSSAPYLLITIPLHLIYTAAASATQDRAPRARMHVADVA
Ga0210380_100220081	3300021082	Groundwater Sediment	MSLRVAVTAPAITLMLAFGHAIVTTFHATAFYFGAAYLLITIPVHLIYTAVALAQQDGAPRVRIHVAD
Ga0222622_100155836	3300022756	Groundwater Sediment	MSIRVAGAAPANRGMLGFGHAIFTTFHVTALYSGAPYLLITIPLHLIYTAAALATQDSAPRVRSHVADVAHDSSPT
Ga0222622_100302891	3300022756	Groundwater Sediment	MTISNERAAPANRALLAFGHAISTALHVTALYFDEAYLLITIPAHLICTAVALAKQDRAPRVRIHVAGVAPDGSPP
Ga0207666_10618841	3300025271	Corn, Switchgrass And Miscanthus Rhizosphere	MRVDSNIAGAAAPTNRGMLAFGHAISTAFHVTALYFGAAYLLITIPLHLIYTAVALAKQDRAPRVRIHVADVAPDGLLP
Ga0207682_100038006	3300025893	Miscanthus Rhizosphere	MRVDINIAGAATTNRGMLAFGHAISTAFHVTALYFGAAYLLITIPVHLIYTAVALAKQDRAPRVRIHVAEVAPDGLLP
Ga0207642_100267802	3300025899	Miscanthus Rhizosphere	MRVDINIAGAAPTNRGMLAFGHAISTAFHVTALYFGAAYLLITIPVHLIYTAVALAKQDRAPRVRIHVADVAPDGLLP
Ga0207642_103169743	3300025899	Miscanthus Rhizosphere	ISTAQAALANRGILAFCHAIYLAFHVTALYFGVAYLLITIPVHLIYTAVALAKQDSLLRVQIRSADVAPQESLPLLSRQSR
Ga0207688_103039032	3300025901	Corn, Switchgrass And Miscanthus Rhizosphere	MRVDISTAQAALANRGILAFCHAIYLAFHVTALYFGVAYLLITIPVHLIYTAVALAKQDSLLRVQIRSADVAPQESLPLLSRQSR
Ga0207680_101172366	3300025903	Switchgrass Rhizosphere	MRVDINIAGAAPTNRGMLAFGHAISTAFHVTALYFGAAYLLITIPLHLIYTAVALAKQDRAPRVRIHVADVAPDGLLP
Ga0207647_104075943	3300025904	Corn Rhizosphere	MRVDINIAGAAPTNRGMLAFGHAISTAFHVTALYFGAAYLLITIPVHLIYTAVALAKQDSLLRVQIRSADVAPQESLPLLSRQS
Ga0207645_101286105	3300025907	Miscanthus Rhizosphere	MRVDSNIAGAAAPTNRGMLAFGHAISTAFHVTALYFGAAYLLITIPLHLIYTAVALAKQDRAPRVRIHV
Ga0207643_100021048	3300025908	Miscanthus Rhizosphere	MRVDISIAGAAPTKRGMLAFGHAISTAFHVTALYFGAAYLLITIPVHLIYTAVALAKQDRAPRVRIHVAEVAPDGLLP
Ga0207643_100620662	3300025908	Miscanthus Rhizosphere	MRVDISTAQAALANRGILAFCHAIYLAFHVTALYFGVAYLLITIPVHLIYTAVALAKQDSLLRVQIRSADVAPQESLPLPSRQSR
Ga0207649_103363122	3300025920	Corn Rhizosphere	MTISIASAAPANRVMLAFGHAIFTTFHVTAVYLGVAYLLITIPVHLIYTAVALAQQDGGPRVRIHVADAAADGSLPLA
Ga0207681_110997602	3300025923	Switchgrass Rhizosphere	MRVDINIAGAAPTNRGMLAFGHAISTAFHVTALYFGAAYLLITIPVHLIYTAVALAKQDRAPRVRIHVAEVAPDGLLP
Ga0207650_103175722	3300025925	Switchgrass Rhizosphere	MTISIASAAPANRVMLAFGHAIFTAFHVTALYFGVAYLLITIPVHLIYTAVALAQQDGAPRVRIHVADAAADGSLP
Ga0207650_104683211	3300025925	Switchgrass Rhizosphere	MRVDINIAGAAPTKRGMLAFGHAISTAFHVTALYFGAAYLLITIPVHLIYTAVALAKQDRAPRVRIHVADVAPDGLLP
Ga0207659_103734793	3300025926	Miscanthus Rhizosphere	MTISNERAAPANRAMLAFGHAISTALHVTALYFDEAYVLITIPAHLIYTAVALAKQDRAPRVRIHVAGVAPDGSPP
Ga0207701_101304923	3300025930	Corn, Switchgrass And Miscanthus Rhizosphere	MRVDISIAGAAPTKRGMLAFGHAISTAFHVTALYFGAAYLLITIPVHLIYTAVALAKQDRAPRVRIHVADVAPDGLLP
Ga0207701_109730361	3300025930	Corn, Switchgrass And Miscanthus Rhizosphere	MRVDSNIAGAAAPTNRGMLAFGHAISTAFHVTALYFGAAYLLITIPLHLIYTAVALAKQDRAPRVRIHVADVAPDG
Ga0207644_103699105	3300025931	Switchgrass Rhizosphere	MRVDISIAGAAPTKRGMLAFGHAISTAFHVTALYFGAAYLLITIPVHLIYTAVALAKQDRAPRVRIHVAEV
Ga0207644_115472981	3300025931	Switchgrass Rhizosphere	MRVDISTAQAALANRGILAFCHAIYLAFHVTALYFGVAYLLITIPVHLIYTAVALAKQDSLLRVQIRSADVAPQESLPLL
Ga0207686_101449262	3300025934	Miscanthus Rhizosphere	RGMLAFGHAISTAFHVTALYFGAAYLLITIPVHLIYTAVALAKQDRAPRVRIHVAEVAPDGLLP
Ga0207709_104176383	3300025935	Miscanthus Rhizosphere	MRVDISTAQAALANRGILAFCHAIYLAFHVTALYFGVAYLLITIPVHLIYTAVALAKQDSLLRVQIRSADVAPQD
Ga0207704_114972131	3300025938	Miscanthus Rhizosphere	AAAPTNRGMLAFGHAISTAFHVTALYFGAAYLLITIPLHLIYTAVALAKQDRAPRVRIHVADVAPDGLLP
Ga0207691_100184026	3300025940	Miscanthus Rhizosphere	MRVDINIAGAAPTKRGMLAFGHAISTAFHVTALYFGAAYLLITIPVHLIYTAVALAKQDRAPRVRIHVAEVAPDGLLP
Ga0207689_104870022	3300025942	Miscanthus Rhizosphere	MRVDISNARAALANRGILAFGHAIYSAFHITALYFGVAYLLITIPVHLIYTAVALAKQDRWLRVQIHIAHVAPEDSLPLLSRQSR
Ga0207651_103842782	3300025960	Switchgrass Rhizosphere	MRVDISTAQAALANRGILAFCHAIYLAFHVTALYFGVAYLLITIPVHLIYTAVALAKQDSLLRVQIRSADVAPQESLPLLSRQSG
Ga0207651_106159663	3300025960	Switchgrass Rhizosphere	MTISIASAAPANRVMLAFGHAISTTFHVTAVYLGVAYLLITIPVHLIYTAVALAQQDGGPRVRIHVADAAADGSLP
Ga0207668_118278861	3300025972	Switchgrass Rhizosphere	MRVDISTAQAALANRGILAFCHAIYLAFHVTALYFGVAYLLITIPVHLIYTAVALAKQDSLLRVQIRSADVAPQESLPL
Ga0207677_123037292	3300026023	Miscanthus Rhizosphere	TTTNRGMLAFGHAISTAFHVTALYFGAAYLLITIPVHLIYTAVALAKQDRAPRVRIHVADVAPDGLLP
Ga0207678_105228212	3300026067	Corn Rhizosphere	MRVDINIAGAAPTNRGMLAFGHAVSTAFHVTALYFGAAYLLITIPVHLIYTAVALAKQDRAPRVRIHVADVAPDGLLP
Ga0207675_1000110518	3300026118	Switchgrass Rhizosphere	MRVDINIAGAATTNRGMLAFGHAISTAFHVTALYFGAAYLLITIPVHLIYTAVALAKQDRAPRVRIHVADVAPDGLLP
Ga0207698_101550792	3300026142	Corn Rhizosphere	MRVDISIAGAAPTKRGMLAFGHAISTAFHVTALYFGAAYLLITIPLHLIYTAVALAKQDRAPRVRIHVADVAPDGLLP
Ga0268265_103551483	3300028380	Switchgrass Rhizosphere	MCVDINIAGAAPTNRGMLAFGHAISTAFHVTALYFGAAYLLITIPVHLIYTAVALAKQDRAPRVRIHVADVAPDGLLP
Ga0310886_111234152	3300031562	Soil	MRVDISTAQAALANRGILAFCHAIYLAFHVTALYFGVAYLLITIPVHLIYTAVALAKQDSLLRVQIRSADVAPQDSLPLIS

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F104385

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Hidden Markov Model


Click on a Sequence Logo column to get its information.
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