Scaffold Ga0207685_10000007

Overview

Basic Information

• Taxon OID: 3300025905
• Scaffold ID: Ga0207685_10000007
• Source Dataset Name: Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 278341
• Total Scaffold Genes: 262
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 181 (69.08%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan: Kellogg Biological Station
• Coordinates
  • Lat. (^o): 42.4774
  • Long. (^o): -85.451

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002204	Metagenome / Metatranscriptome	584	Y
F014266	Metagenome	264	Y
F096987	Metagenome / Metatranscriptome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207685_10000007111	F014266	N/A	MSYQHVENLLIRYRNQAVSLKTISGGVYEGTISDVTNDYVALKIKGTTGEDDVVIVLLHSIESILPRSSR
Ga0207685_1000000740	F002204	AGG	MTLSEENETVDISYEIRVKPGRAGTDPNAPDWEVCELENGEIADNADIYDNLTLAEANQIAGMWQRKKDEAEGGAAGA
Ga0207685_1000000782	F096987	GGAGG	MITKFILDENGLELSEYAVAAALVAIAVAGVFAALGDAIVGKINELTGHIAAGN