Metagenome / Metatranscriptome Family F096987

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F096987
Family Type	Metagenome / Metatranscriptome
Number of Sequences	104
Average Sequence Length	53 residues
Representative Sequence	MIKKFFNDETGLELSEYAVAAALVAIAVVGAFAALGTTISDKINELGTHISTGK
Number of Associated Samples	84
Number of Associated Scaffolds	95

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	72.82 %
% of genes near scaffold ends (potentially truncated)	30.77 %
% of genes from short scaffolds (< 2000 bps)	76.92 %
Associated GOLD sequencing projects	78
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.54

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (92.308 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (20.192 % of family members)
Environment Ontology (ENVO)	Unclassified (36.538 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (54.808 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 60.98% β-sheet: 0.00% Coil/Unstructured: 39.02%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.54
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.54
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 95 Family Scaffolds
PF01478	Peptidase_A24	40.00
PF04964	Flp_Fap	12.63
PF02954	HTH_8	4.21
PF16976	RcpC	3.16
PF04977	DivIC	3.16
PF13629	T2SS-T3SS_pil_N	2.11
PF02880	PGM_PMM_III	2.11
PF07811	TadE	2.11
PF13400	Tad	1.05
PF00437	T2SSE	1.05
PF01039	Carboxyl_trans	1.05
PF07638	Sigma70_ECF	1.05
PF13441	Gly-zipper_YMGG	1.05
PF00561	Abhydrolase_1	1.05

COG ID	Name	Functional Category	% Frequency in 95 Family Scaffolds
COG3847	Flp pilus assembly protein, pilin Flp	Extracellular structures [W]	12.63
COG2919	Cell division protein FtsB	Cell cycle control, cell division, chromosome partitioning [D]	3.16
COG4839	Cell division protein FtsL	Cell cycle control, cell division, chromosome partitioning [D]	3.16
COG0033	Phosphoglucomutase/phosphomannomutase	Carbohydrate transport and metabolism [G]	2.11
COG1109	Phosphomannomutase	Carbohydrate transport and metabolism [G]	2.11
COG0777	Acetyl-CoA carboxylase beta subunit	Lipid transport and metabolism [I]	1.05
COG0825	Acetyl-CoA carboxylase alpha subunit	Lipid transport and metabolism [I]	1.05
COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	Transcription [K]	1.05
COG4799	Acetyl-CoA carboxylase, carboxyltransferase component	Lipid transport and metabolism [I]	1.05

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	92.31 %
Unclassified	root	N/A	7.69 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	92.31 %
Unclassified	root	N/A	7.69 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	92.31 %
Unclassified	root	N/A	7.69 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	44.23 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	24.04 %
Unclassified	root	N/A	7.69 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.96 %

Name	Rank	Taxonomy	Distribution
Blastocatellia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia	10.58 %
Unclassified	root	N/A	7.69 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	6.73 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	3.85 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1.92 %
Firmicutes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	0.96 %

Name	Rank	Taxonomy	Distribution
unclassified Blastocatellia	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia	7.69 %
Unclassified	root	N/A	7.69 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	6.73 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	3.85 %
Blastocatellales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales	2.88 %
Maricaulales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Maricaulales	0.96 %
Firmicutes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	0.96 %

Name	Rank	Taxonomy	Distribution
Blastocatellia bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	7.69 %
Unclassified	root	N/A	7.69 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	6.73 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	3.85 %
Pyrinomonadaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae	2.88 %
Maricaulaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Maricaulales → Maricaulaceae	0.96 %
Firmicutes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	0.96 %

Name	Rank	Taxonomy	Distribution
Blastocatellia bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	7.69 %
Unclassified	root	N/A	7.69 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	6.73 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	3.85 %
Pyrinomonas	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → Pyrinomonas	2.88 %
Maricaulis	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Maricaulales → Maricaulaceae → Maricaulis	0.96 %
Firmicutes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	0.96 %

Name	Rank	Taxonomy	Distribution
Blastocatellia bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	7.69 %
Unclassified	root	N/A	7.69 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	6.73 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	3.85 %
Pyrinomonas methylaliphatogenes	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → Pyrinomonas → Pyrinomonas methylaliphatogenes	2.88 %
Maricaulis maris	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Maricaulales → Maricaulaceae → Maricaulis → Maricaulis maris	0.96 %
Firmicutes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	0.96 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2124908043\|A2_c1_ConsensusfromContig19695	All Organisms → cellular organisms → Bacteria	655	Open in IMG/M
3300003324\|soilH2_10010581	All Organisms → cellular organisms → Bacteria	4026	Open in IMG/M
3300004156\|Ga0062589_102089308	All Organisms → cellular organisms → Bacteria	577	Open in IMG/M
3300004479\|Ga0062595_101660249	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	599	Open in IMG/M
3300004479\|Ga0062595_102474777	All Organisms → cellular organisms → Bacteria → Proteobacteria	517	Open in IMG/M
3300005175\|Ga0066673_10807847	All Organisms → cellular organisms → Bacteria → Proteobacteria	536	Open in IMG/M
3300005333\|Ga0070677_10198143	All Organisms → cellular organisms → Bacteria → Proteobacteria	967	Open in IMG/M
3300005338\|Ga0068868_100724189	All Organisms → cellular organisms → Bacteria → Proteobacteria	892	Open in IMG/M
3300005345\|Ga0070692_10615751	All Organisms → cellular organisms → Bacteria	720	Open in IMG/M
3300005353\|Ga0070669_100390818	All Organisms → cellular organisms → Bacteria	1136	Open in IMG/M
3300005355\|Ga0070671_100480338	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	1068	Open in IMG/M
3300005445\|Ga0070708_101896289	All Organisms → cellular organisms → Bacteria → Proteobacteria	552	Open in IMG/M
3300005445\|Ga0070708_102003872	All Organisms → cellular organisms → Bacteria → Proteobacteria	536	Open in IMG/M
3300005445\|Ga0070708_102058953	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	528	Open in IMG/M
3300005446\|Ga0066686_11113938	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Maricaulales → Maricaulaceae → Maricaulis → Maricaulis maris	507	Open in IMG/M
3300005451\|Ga0066681_10338557	All Organisms → cellular organisms → Bacteria → Proteobacteria	923	Open in IMG/M
3300005451\|Ga0066681_10338557	All Organisms → cellular organisms → Bacteria → Proteobacteria	923	Open in IMG/M
3300005468\|Ga0070707_100891775	All Organisms → cellular organisms → Bacteria → Proteobacteria	854	Open in IMG/M
3300005471\|Ga0070698_101335820	All Organisms → cellular organisms → Bacteria → Proteobacteria	667	Open in IMG/M
3300005518\|Ga0070699_100284958	All Organisms → cellular organisms → Bacteria → Proteobacteria	1480	Open in IMG/M
3300005536\|Ga0070697_100077154	All Organisms → cellular organisms → Bacteria → Proteobacteria	2740	Open in IMG/M
3300006031\|Ga0066651_10312588	All Organisms → cellular organisms → Bacteria → Acidobacteria	842	Open in IMG/M
3300006163\|Ga0070715_10000031	All Organisms → cellular organisms → Bacteria	86230	Open in IMG/M
3300006796\|Ga0066665_10207004	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1526	Open in IMG/M
3300006796\|Ga0066665_10207004	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1526	Open in IMG/M
3300006876\|Ga0079217_11231187	All Organisms → cellular organisms → Bacteria → Proteobacteria	572	Open in IMG/M
3300006903\|Ga0075426_11350256	All Organisms → cellular organisms → Bacteria → Proteobacteria	541	Open in IMG/M
3300006903\|Ga0075426_11350256	All Organisms → cellular organisms → Bacteria → Proteobacteria	541	Open in IMG/M
3300006914\|Ga0075436_100635515	All Organisms → cellular organisms → Bacteria → Proteobacteria	788	Open in IMG/M
3300007004\|Ga0079218_10004205	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	6140	Open in IMG/M
3300007004\|Ga0079218_10131260	All Organisms → cellular organisms → Bacteria → Proteobacteria	1790	Open in IMG/M
3300007265\|Ga0099794_10150258	All Organisms → cellular organisms → Bacteria → Acidobacteria	1182	Open in IMG/M
3300009038\|Ga0099829_10342425	All Organisms → cellular organisms → Bacteria → Acidobacteria	1230	Open in IMG/M
3300009088\|Ga0099830_11321404	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	599	Open in IMG/M
3300009137\|Ga0066709_101297651	All Organisms → cellular organisms → Bacteria → Acidobacteria	1067	Open in IMG/M
3300009148\|Ga0105243_11549460	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	688	Open in IMG/M
3300009792\|Ga0126374_10631870	Not Available	795	Open in IMG/M
3300010047\|Ga0126382_10383211	All Organisms → cellular organisms → Bacteria → Acidobacteria	1090	Open in IMG/M
3300010371\|Ga0134125_10116480	All Organisms → cellular organisms → Bacteria	2974	Open in IMG/M
3300010403\|Ga0134123_10118763	All Organisms → cellular organisms → Bacteria → Acidobacteria	2137	Open in IMG/M
3300011270\|Ga0137391_10430570	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	1124	Open in IMG/M
3300012198\|Ga0137364_10109859	All Organisms → cellular organisms → Bacteria → Acidobacteria	1953	Open in IMG/M
3300012199\|Ga0137383_10016728	All Organisms → cellular organisms → Bacteria → Proteobacteria	5018	Open in IMG/M
3300012201\|Ga0137365_10024479	All Organisms → cellular organisms → Bacteria → Proteobacteria	4669	Open in IMG/M
3300012203\|Ga0137399_10275474	All Organisms → cellular organisms → Bacteria	1385	Open in IMG/M
3300012207\|Ga0137381_11395188	Not Available	593	Open in IMG/M
3300012208\|Ga0137376_10010332	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → Pyrinomonas → Pyrinomonas methylaliphatogenes	6641	Open in IMG/M
3300012208\|Ga0137376_10211051	All Organisms → cellular organisms → Bacteria	1681	Open in IMG/M
3300012209\|Ga0137379_10834983	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	826	Open in IMG/M
3300012209\|Ga0137379_10834983	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	826	Open in IMG/M
3300012210\|Ga0137378_10423230	All Organisms → cellular organisms → Bacteria → Acidobacteria	1235	Open in IMG/M
3300012351\|Ga0137386_10128181	All Organisms → cellular organisms → Bacteria	1807	Open in IMG/M
3300012351\|Ga0137386_10165881	All Organisms → cellular organisms → Bacteria → Acidobacteria	1582	Open in IMG/M
3300012356\|Ga0137371_10000057	All Organisms → cellular organisms → Bacteria	57522	Open in IMG/M
3300012678\|Ga0136615_10438626	All Organisms → cellular organisms → Bacteria → Acidobacteria	563	Open in IMG/M
3300012918\|Ga0137396_11060886	Not Available	582	Open in IMG/M
3300012922\|Ga0137394_10495782	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	1037	Open in IMG/M
3300013100\|Ga0157373_10869172	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	668	Open in IMG/M
3300014968\|Ga0157379_10647818	All Organisms → cellular organisms → Bacteria → Acidobacteria	989	Open in IMG/M
3300015162\|Ga0167653_1000031	All Organisms → cellular organisms → Bacteria	105293	Open in IMG/M
3300015164\|Ga0167652_1000093	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → Pyrinomonas → Pyrinomonas methylaliphatogenes	32885	Open in IMG/M
3300015190\|Ga0167651_1000085	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → Pyrinomonas → Pyrinomonas methylaliphatogenes	47551	Open in IMG/M
3300018000\|Ga0184604_10113015	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	856	Open in IMG/M
3300018071\|Ga0184618_10097701	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1147	Open in IMG/M
3300018476\|Ga0190274_11045987	All Organisms → cellular organisms → Bacteria → Acidobacteria	893	Open in IMG/M
3300018476\|Ga0190274_11045987	All Organisms → cellular organisms → Bacteria → Acidobacteria	893	Open in IMG/M
3300018476\|Ga0190274_13839553	All Organisms → cellular organisms → Bacteria → Acidobacteria	509	Open in IMG/M
3300018482\|Ga0066669_10015195	All Organisms → cellular organisms → Bacteria	4100	Open in IMG/M
3300018482\|Ga0066669_10015195	All Organisms → cellular organisms → Bacteria	4100	Open in IMG/M
3300018482\|Ga0066669_10015195	All Organisms → cellular organisms → Bacteria	4100	Open in IMG/M
3300018920\|Ga0190273_12383472	All Organisms → cellular organisms → Bacteria → Acidobacteria	503	Open in IMG/M
3300019377\|Ga0190264_11391317	All Organisms → cellular organisms → Bacteria → Acidobacteria	600	Open in IMG/M
3300019458\|Ga0187892_10000768	All Organisms → cellular organisms → Bacteria	80510	Open in IMG/M
3300019767\|Ga0190267_11491230	Not Available	520	Open in IMG/M
3300019767\|Ga0190267_11491230	Not Available	520	Open in IMG/M
3300019865\|Ga0193748_1007750	All Organisms → cellular organisms → Bacteria → Acidobacteria	936	Open in IMG/M
3300025905\|Ga0207685_10000007	All Organisms → cellular organisms → Bacteria	278341	Open in IMG/M
3300025922\|Ga0207646_10478189	All Organisms → cellular organisms → Bacteria → Acidobacteria	1123	Open in IMG/M
3300025923\|Ga0207681_10558981	All Organisms → cellular organisms → Bacteria → Acidobacteria	942	Open in IMG/M
3300025923\|Ga0207681_11767314	All Organisms → cellular organisms → Bacteria → Acidobacteria	516	Open in IMG/M
3300025960\|Ga0207651_10343978	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1254	Open in IMG/M
3300026023\|Ga0207677_12175885	Not Available	516	Open in IMG/M
3300026075\|Ga0207708_11904992	All Organisms → cellular organisms → Bacteria → Acidobacteria	521	Open in IMG/M
3300026116\|Ga0207674_10150034	All Organisms → cellular organisms → Bacteria	2288	Open in IMG/M
3300026118\|Ga0207675_100313082	All Organisms → cellular organisms → Bacteria → Acidobacteria	1531	Open in IMG/M
3300026298\|Ga0209236_1139466	All Organisms → cellular organisms → Bacteria → Acidobacteria	1044	Open in IMG/M
3300026323\|Ga0209472_1140109	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	923	Open in IMG/M
3300027882\|Ga0209590_10175046	All Organisms → cellular organisms → Bacteria → Acidobacteria	1345	Open in IMG/M
3300027882\|Ga0209590_10667275	All Organisms → cellular organisms → Bacteria → Acidobacteria	666	Open in IMG/M
3300027886\|Ga0209486_10000722	All Organisms → cellular organisms → Bacteria	14495	Open in IMG/M
3300030988\|Ga0308183_1023338	All Organisms → cellular organisms → Bacteria → Acidobacteria	1077	Open in IMG/M
3300030989\|Ga0308196_1070369	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	516	Open in IMG/M
3300031093\|Ga0308197_10204844	All Organisms → cellular organisms → Bacteria	673	Open in IMG/M
3300031093\|Ga0308197_10378841	Not Available	547	Open in IMG/M
3300031095\|Ga0308184_1020955	All Organisms → cellular organisms → Bacteria	703	Open in IMG/M
3300031124\|Ga0308151_1046388	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	520	Open in IMG/M
3300031229\|Ga0299913_11020674	All Organisms → cellular organisms → Bacteria → Acidobacteria	793	Open in IMG/M
3300031229\|Ga0299913_11020674	All Organisms → cellular organisms → Bacteria → Acidobacteria	793	Open in IMG/M
3300031229\|Ga0299913_11379739	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	660	Open in IMG/M
3300031424\|Ga0308179_1043453	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	567	Open in IMG/M
3300031740\|Ga0307468_100054517	All Organisms → cellular organisms → Bacteria	2114	Open in IMG/M
3300034144\|Ga0334962_000005	All Organisms → cellular organisms → Bacteria	399034	Open in IMG/M
3300034174\|Ga0334932_000020	All Organisms → cellular organisms → Bacteria	179205	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	83.65%
Host-Associated	Host-Associated	16.35%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	80.77%
Plants	Host-Associated → Plants	16.35%
Aquatic	Environmental → Aquatic	2.88%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	79.81%
Rhizosphere	Host-Associated → Plants → Rhizosphere	12.50%
Rhizoplane	Host-Associated → Plants → Rhizoplane	3.85%
Sediment	Environmental → Aquatic → Sediment	1.92%
Freshwater	Environmental → Aquatic → Freshwater	0.96%
Cave	Environmental → Terrestrial → Cave	0.96%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	67.31%
Loam	Environmental → Terrestrial → Soil → Loam	12.50%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	6.73%
Soil	Host-Associated → Plants → Rhizosphere → Soil	5.77%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	3.85%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	1.92%
Ice	Environmental → Aquatic → Freshwater → Ice	0.96%
Unclassified	Environmental → Terrestrial → Cave → Unclassified	0.96%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	41.35%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	11.54%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	11.54%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	7.69%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	6.73%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	5.77%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	3.85%
Uranium Contaminated	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated	2.88%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	1.92%
Desert	Environmental → Terrestrial → Soil → Unclassified → Desert	1.92%
Unclassified	Environmental → Aquatic → Freshwater → Ice → Unclassified	0.96%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	0.96%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	0.96%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.96%
Unclassified	Environmental → Terrestrial → Cave → Unclassified → Unclassified	0.96%

Habitat	Taxonomy	Distribution
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	20.19%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	14.42%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	11.54%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	6.73%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	4.81%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	4.81%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	3.85%
Glacier Forefield Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil	2.88%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	2.88%
Soil	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated → Soil	2.88%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	2.88%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	1.92%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	1.92%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	1.92%
Sub-Biocrust Soil	Environmental → Terrestrial → Soil → Unclassified → Desert → Sub-Biocrust Soil	1.92%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	1.92%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.92%
Polar Desert Sand	Environmental → Aquatic → Freshwater → Ice → Unclassified → Polar Desert Sand	0.96%
Sugarcane Root And Bulk Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Sugarcane Root And Bulk Soil	0.96%
Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Soil	0.96%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.96%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.96%
Bio-Ooze	Environmental → Terrestrial → Cave → Unclassified → Unclassified → Bio-Ooze	0.96%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.96%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.96%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.96%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.96%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	0.96%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2124908043	Permafrost microbial communities from permafrost in Bonanza Creek, Alaska - Active Layer A2	Environmental	Open in IMG/M
3300003324	Sugarcane bulk soil Sample H2	Environmental	Open in IMG/M
3300004156	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1	Environmental	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300005175	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_122	Environmental	Open in IMG/M
3300005333	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG	Host-Associated	Open in IMG/M
3300005338	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2	Host-Associated	Open in IMG/M
3300005345	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-2 metaG	Environmental	Open in IMG/M
3300005353	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG	Host-Associated	Open in IMG/M
3300005355	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG	Host-Associated	Open in IMG/M
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental	Open in IMG/M
3300005446	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_135	Environmental	Open in IMG/M
3300005451	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_130	Environmental	Open in IMG/M
3300005468	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG	Environmental	Open in IMG/M
3300005471	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG	Environmental	Open in IMG/M
3300005518	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG	Environmental	Open in IMG/M
3300005536	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG	Environmental	Open in IMG/M
3300006031	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Angelo_100	Environmental	Open in IMG/M
3300006163	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG	Environmental	Open in IMG/M
3300006796	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114	Environmental	Open in IMG/M
3300006876	Agricultural soil microbial communities from Utah to study Nitrogen management - NC AS200	Environmental	Open in IMG/M
3300006903	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD5	Host-Associated	Open in IMG/M
3300006914	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5	Host-Associated	Open in IMG/M
3300007004	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Compost	Environmental	Open in IMG/M
3300007265	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1	Environmental	Open in IMG/M
3300009038	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG	Environmental	Open in IMG/M
3300009088	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG	Environmental	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300009148	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG	Host-Associated	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010371	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1	Environmental	Open in IMG/M
3300010403	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3	Environmental	Open in IMG/M
3300011270	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4B metaG	Environmental	Open in IMG/M
3300012198	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_20_16 metaG	Environmental	Open in IMG/M
3300012199	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaG	Environmental	Open in IMG/M
3300012201	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_40_16 metaG	Environmental	Open in IMG/M
3300012203	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG	Environmental	Open in IMG/M
3300012207	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_115_16 metaG	Environmental	Open in IMG/M
3300012208	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaG	Environmental	Open in IMG/M
3300012209	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_80_16 metaG	Environmental	Open in IMG/M
3300012210	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_60_16 metaG	Environmental	Open in IMG/M
3300012351	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_100_16 metaG	Environmental	Open in IMG/M
3300012356	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_40_16 metaG	Environmental	Open in IMG/M
3300012678	Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ288 (22.06)	Environmental	Open in IMG/M
3300012918	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czcobulk3.16 metaG	Environmental	Open in IMG/M
3300012922	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk1.16 metaG	Environmental	Open in IMG/M
3300013100	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG	Host-Associated	Open in IMG/M
3300014968	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG	Host-Associated	Open in IMG/M
3300015162	Arctic soil microbial communities from a glacier forefield, Storglaci?ren, Tarfala, Sweden (Sample st-4c, rock/ice/stream interface)	Environmental	Open in IMG/M
3300015164	Arctic soil microbial communities from a glacier forefield, Storglaci?ren, Tarfala, Sweden (Sample st-4b, rock/ice/stream interface)	Environmental	Open in IMG/M
3300015190	Arctic soil microbial communities from a glacier forefield, Storglaci?ren, Tarfala, Sweden (Sample st-4a, rock/ice/stream interface)	Environmental	Open in IMG/M
3300018000	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_5_coex	Environmental	Open in IMG/M
3300018071	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30_b1	Environmental	Open in IMG/M
3300018476	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 531 T	Environmental	Open in IMG/M
3300018482	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118	Environmental	Open in IMG/M
3300018920	Populus adjacent soil microbial communities from riparian zone of Shoshone River, Wyoming, USA - 504 IS	Environmental	Open in IMG/M
3300019377	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 112 T	Environmental	Open in IMG/M
3300019458	Bio-ooze microbial communities from a basaltic lava cave in the Kipuka Kanohina Cave System on the Island of Hawaii, USA - MA170107-3 metaG	Environmental	Open in IMG/M
3300019767	Populus adjacent soil microbial communities from riparian zone of Oak Creek, Arizona, USA - 239 T	Environmental	Open in IMG/M
3300019865	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L1s1	Environmental	Open in IMG/M
3300025905	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025922	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025923	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025934	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025960	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026023	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026075	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300026116	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026118	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026298	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_1_40cm (SPAdes)	Environmental	Open in IMG/M
3300026323	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_130 (SPAdes)	Environmental	Open in IMG/M
3300027882	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027886	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Compost (SPAdes)	Environmental	Open in IMG/M
3300030988	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_157 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030989	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_197 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031093	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_198 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031095	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_158 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031124	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_140 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031229	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT155D38	Environmental	Open in IMG/M
3300031424	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_150 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031740	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05	Environmental	Open in IMG/M
3300034144	Sub-biocrust soil microbial communities from Mojave Desert, California, United States - 58SNS	Environmental	Open in IMG/M
3300034174	Sub-biocrust soil microbial communities from Mojave Desert, California, United States - 28HNS	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
A2_c1_00881130	2124908043	Soil	MITKFLLDETGLELSEYAVAAALVAIAVAGVFAALGGVIAGKLNELSGHISTGK
soilH2_100105813	3300003324	Sugarcane Root And Bulk Soil	MIKRFFSDETGLELSEYXYAVAAALVALACVAAFQFLGSSIGTKIDSLGDTINTGQAQ*
Ga0062589_1020893082	3300004156	Soil	MLKNFFSDETGLELSEYAVAAALIAIAAAGVFTALGDSISTKITELSGHVASGK*
Ga0062595_1016602492	3300004479	Soil	MLKTLLKDETGLELSEYALAAALIAIAVAGVFTALGDSISAKITELSGHIASGN*
Ga0062595_1024747772	3300004479	Soil	MKNFWLDETGLELSEYAVAAALVAIAVVGAFTALGTAIGDKITNL
Ga0066673_108078471	3300005175	Soil	MITKFMLDETGLELSEYAVAAALVAVAVAGVFAALGNAIVGKISELTGHIAAG
Ga0070677_101981433	3300005333	Miscanthus Rhizosphere	MIKKFFCDETGLELSEYAVAAALVAIAVVGAFGALGTTISDKINDLGTHISTGQ*
Ga0068868_1007241891	3300005338	Miscanthus Rhizosphere	MLKNFFSDETGLELSEYAVAAALIAIAAAGVFTALGDSISTKITELGGHIASGK*
Ga0070692_106157512	3300005345	Corn, Switchgrass And Miscanthus Rhizosphere	NQWTKVMLKSFFTNETGLELSEYAVAAALIAIAVAGVFTALGDSISLKVNELGTHISTGK
Ga0070669_1003908181	3300005353	Switchgrass Rhizosphere	MLKSFFTDQTGLELSEYAVAAALIAIAAAGVFTALGDAISLKVNELGTHISTGK*
Ga0070671_1004803381	3300005355	Switchgrass Rhizosphere	MKNFWLDETGLELSEYAVAAALVAIAVVGAFTALGTAIGDKITNLGST
Ga0070708_1018962892	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	ELSEYAVAAALIAIAAAGVFAALGDAIVGKINELTGHIASGN*
Ga0070708_1020038722	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	CGGKDMITKFMLDENGLELSEYAVAAALVAIAVAGVFAALGNAIVGKISELTGHIAAGN*
Ga0070708_1020589532	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	MIKRFIFDESGLELSEYAVAAALVAVAVVGAFAALGTTISDKINELGTHISTGK*
Ga0066686_111139381	3300005446	Soil	MIRKFFYDESGLELSEYAVAAALVAIAVVGAFAALGTTISDKINELGTHISTGK*
Ga0066681_103385571	3300005451	Soil	MIKKFFNDETGLELSEYAVAAALVAIAVVGAFAALGTTISDKINELGTHISTGK*
Ga0066681_103385572	3300005451	Soil	MITKFMLDETGLELSEYAVAAALVAVAVAGVFAALGNAIVGKISELTGHIAAGN*
Ga0070707_1008917751	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	MKNFLLDETALELSEYAVAAALVAIAVVGAFTALGTAIGDKITSLGSTISK*
Ga0070698_1013358201	3300005471	Corn, Switchgrass And Miscanthus Rhizosphere	DEKGLELSEYAVAAALIAIAAAGVFAALGDAIVGKINELTGHIASGN*
Ga0070699_1002849582	3300005518	Corn, Switchgrass And Miscanthus Rhizosphere	MIESLIFDDSGLELSEYAVAAALIAIAVVAAFVALGSTISQKITELGTHISSGQ*
Ga0070697_1000771544	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	MKKFLFDETGLELSEYAVAAALVAIAVVAAFTALGTAIGDKITTLGTTISK*
Ga0066651_103125883	3300006031	Soil	ELSEYAVAAALVAVAVAGVFAALGNAIVGKISELTGHIAAGN*
Ga0070715_100000315	3300006163	Corn, Switchgrass And Miscanthus Rhizosphere	MITKFILDENGLELSEYAVAAALVAIAVAGVFAALGDAIVGKINELTGHIAAGN*
Ga0066665_102070042	3300006796	Soil	MTNSNKSMLKKFLQDETALELSEYAVAAALVAIAVAGVFMALGDTITTRINELSGHITAGK*
Ga0066665_102070043	3300006796	Soil	MIKNFLSDESGLELSEYAVAAALVAIAVVGAFFTLGGTISDKINELGTHISTGK*
Ga0079217_112311871	3300006876	Agricultural Soil	RDETGLELSEYAVAAALVAIAVVGAFTALGGAISGKITDLGNTISN*
Ga0075426_113502561	3300006903	Populus Rhizosphere	MIKNFFNDETGLELSEYAVAAALVAIAVVGAFAALGTTISDKINELGTHISTGK*
Ga0075426_113502562	3300006903	Populus Rhizosphere	MITKFMLDENGLELSEYAVAAALVAIAVAGVFAALGNAIVGKISELTGHIAAGN*
Ga0075436_1006355152	3300006914	Populus Rhizosphere	MIGKFIADEKGLELSEYAVAAALVAIAAAGVFAALGDAIVGKINELTGHIASGN*
Ga0079218_100042051	3300007004	Agricultural Soil	LSEYAVAAALVAIAVVGAFGLLGEAITGKIGELTDAIENDGAAPAAP*
Ga0079218_101312602	3300007004	Agricultural Soil	MINKFLHDETGLELSEYAVAAALVAIAVAGVFMTLGNAITIRIGELAGHVDAGK*
Ga0099794_101502582	3300007265	Vadose Zone Soil	MKKFLLDETGLELSEYAVAAALVAIAVVAAFTALGTAIGDKITSLGTTISK*
Ga0099829_103424253	3300009038	Vadose Zone Soil	VRVKTMKKFLFDETGLELSEYAVAAALVAIAVVAAFTALGTAIGDKITTLGTTISK*
Ga0099830_113214042	3300009088	Vadose Zone Soil	VRVKTMKKFLFDETGLELSEYAVAAALVAIAVVAAFTALGTAIGDKIT
Ga0066709_1012976511	3300009137	Grasslands Soil	ETGLELSEYAVAAALVAIAVVGAFSALGGTISAKINELGTHISTGK*
Ga0105243_115494602	3300009148	Miscanthus Rhizosphere	MIKKFLKDETGLELSGYAVAAALVAIAVAGVFMALGETITGRINELSGHITAGK*
Ga0126374_106318701	3300009792	Tropical Forest Soil	MNTIKNFFNDETALELSEYAVGAALIAIAAAATYKLLGQAIIDKINALITSMN*
Ga0126382_103832112	3300010047	Tropical Forest Soil	MMLKTFLLDETGLELSEYAVAAALIAIAVAGVFTALGDAITTKVNELSGHISSGN*
Ga0134125_101164803	3300010371	Terrestrial Soil	MLKNFFSDETGLELSEYAVAAALIAIAAAGVFTALGDSISGKITELSGHLAFDK*
Ga0134123_101187633	3300010403	Terrestrial Soil	MLKSLFKDETGLELSEYAVAAALIAIAVAGVFTALGDSISLKVNELGTHISTGK*
Ga0137391_104305703	3300011270	Vadose Zone Soil	VKVKTMKKFLFDETGLELSEYAVAAALVAIAVVAAFTALGTAIGDKITTLGTTISK*
Ga0137364_101098591	3300012198	Vadose Zone Soil	MIRNFFRDETGLELSEYAVAAALVAIAVVGAFSALGTTISSKITELGTHISTGK*
Ga0137383_100167286	3300012199	Vadose Zone Soil	MIRKFFNDESGLELSEYAVAAALVAIAVVGAFAAVGTTISDKINELGTHISTGK*
Ga0137365_100244794	3300012201	Vadose Zone Soil	MIRKFFNDESGLELSEYAVAAALVAIAVVGAFAALGTTISDKINELGTHISTGK*
Ga0137399_102754743	3300012203	Vadose Zone Soil	VKVKTMKKFLFDETGLELSEYAVAAALVAIAVVAAFTALGTAIGDKITTLGTTISQ*
Ga0137381_113951882	3300012207	Vadose Zone Soil	MITKFMLDENGLELSEYAVAAALVAIAVAGVFAALGGAIVGKISELTGHIAAGN*
Ga0137376_100103323	3300012208	Vadose Zone Soil	MFKTFLRDETGLELSEYAVAAALIAIAVAGVFSALGDAISTKITELGGHIATGK*
Ga0137376_102110513	3300012208	Vadose Zone Soil	MIKNFLSDENGLELSEYAVAAALVAIAVVGAFFTLGGTISDKINELGTHISTGK*
Ga0137379_108349832	3300012209	Vadose Zone Soil	MITKFMLDETGLELSEYAVAAALVVVAVAGVFAALGNAIVGKISELTGHIAAGN*
Ga0137379_108349833	3300012209	Vadose Zone Soil	ASEILPRRRGGIMIRKFFNDESGLELSEYAVAAALVAIAVVGAFAALGTTISDKINELGTHISTGK*
Ga0137378_104232301	3300012210	Vadose Zone Soil	VMIKKFFNDETGLELSEYAVAAALVAIAVVGAFAALGTTISDKINELGTHISTGK*
Ga0137386_101281811	3300012351	Vadose Zone Soil	GKHMTTNDKLDENGLELSEYAVAAALTALAVAGVFAALGDAIVGKITELTGHIAAGN*
Ga0137386_101658811	3300012351	Vadose Zone Soil	MITKFMLDENGLELSEYAVAAALVAIAVAGVFAALGNAIVGKITELTGHIAAGN*
Ga0137371_1000005746	3300012356	Vadose Zone Soil	MLKKFLQDETALELSEYAVAAALVAIAVAGVFMALGDTITTRINELSGHITAGK*
Ga0136615_104386262	3300012678	Polar Desert Sand	FADETGLELSEYAVAAALVAIAVVGAFGALGGAITARITELVGHID*
Ga0137396_110608862	3300012918	Vadose Zone Soil	MIKNFLSDENGLELSEYAVAAALIAIAVVGAFFTLGGTISDKINELGTHISTGK*
Ga0137394_104957823	3300012922	Vadose Zone Soil	VEVTNVKRFLLDETGLELSEYEVDAALVAISVVAAFTALGTAISDKITSLGTTISK*
Ga0157373_108691722	3300013100	Corn Rhizosphere	MLKNFFSDETGLELSEYAVAAALIAIAAAGVFTALGDSISTKINELGGHIASGK*
Ga0157379_106478181	3300014968	Switchgrass Rhizosphere	MLKNFFSDETGLELSEYAVAAALIAIAVAGVFTALGDSISTKITELSGHVASGK*
Ga0167653_10000311	3300015162	Glacier Forefield Soil	VKRFLLDETGLELSEYAVAAALVAIAVVAAFTALGTAISDKITNL
Ga0167652_10000934	3300015164	Glacier Forefield Soil	VKRFLLDETGLELSEYAVAAALVAIAVVAAFTALGTAISDKITNLGTTISK*
Ga0167651_10000854	3300015190	Glacier Forefield Soil	VKRFLLDETGLELSEYAVAAALVAIAVVAAFTALGTAVSDKITNLGTTISK*
Ga0184604_101130151	3300018000	Groundwater Sediment	MIRKFFRDETGLELSEYAVAAALVAIAVVTAFGTLGSTISTKIGELGTHISTGK
Ga0184618_100977013	3300018071	Groundwater Sediment	MFQKFLRDDTGLELSEYAVAAALIAIAVAGVFTALGDSISLKIGELGSHIASGK
Ga0190274_110459872	3300018476	Soil	MFKIFLKDETGLELSEYAVAAALVAIAVAGVFTALGDSISGKVTELSGHISSGQ
Ga0190274_110459873	3300018476	Soil	MIKKFFSDETGLELSEYAVAAALVAIAVVGAFGALGTTISDKINDLGTHISTGQ
Ga0190274_138395531	3300018476	Soil	MFKIFLKDETGLELSEYALAAALIAVAVAGVFTALGTSISGKVTELSGHISSGQ
Ga0066669_100151951	3300018482	Grasslands Soil	ETGLELSEYAVAAAPVAIAVVGASAALGTTISTKINELGTHISTGK
Ga0066669_100151952	3300018482	Grasslands Soil	MIKKFFNDETGLELSEYAVAAALVAIAVVGAFAALGTTISDKINELGTHISTGK
Ga0066669_100151953	3300018482	Grasslands Soil	MITKFMLDETGLELSEYAVAAALVAVAVAGVFAALGNAIVGKIAELTGHIAAGN
Ga0190273_123834722	3300018920	Soil	MIKNFFRDETGLELSEYAVAAALVAIAVVGAFFTLGGTISSKINELGT
Ga0190264_113913171	3300019377	Soil	ETGLELSEYAVAAALIAIAAAGVFTALGTSISSKVNDLGGHISSGK
Ga0187892_1000076846	3300019458	Bio-Ooze	MKRFLLDETGLELSEYAVAAALVAIAVVGAFTALGSAISGKITVLGDTIAK
Ga0190267_114912302	3300019767	Soil	MIKKFFCDETGLELSEYAVAAALVAIAVVGAFSALGGTISGKIGELGTHISTGK
Ga0190267_114912303	3300019767	Soil	MLTKFSKDETGLELSEYAVAAALVAIAVAGVFTALGDTISVRIGELSGHISSGK
Ga0193748_10077503	3300019865	Soil	MFQKFLKDDTGLELSEYAVAAALIAIAVAGVFTALGDSISLKIGELGSHIASGK
Ga0207685_1000000782	3300025905	Corn, Switchgrass And Miscanthus Rhizosphere	MITKFILDENGLELSEYAVAAALVAIAVAGVFAALGDAIVGKINELTGHIAAGN
Ga0207646_104781892	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	MIKRFIFDESGLELSEYAVAAALVAVAVVGAFAALGTTISDKINELGTHISTGK
Ga0207681_105589811	3300025923	Switchgrass Rhizosphere	KSFFTDQTGLELSEYAVAAALIAIAAAGVFTALGDAISLKVNELGTHISTGK
Ga0207681_117673142	3300025923	Switchgrass Rhizosphere	MLKSFFTDQTGLELSEYAVAAALIAIAAAGVFTALGDAISLKVNELGTHIST
Ga0207686_107647052	3300025934	Miscanthus Rhizosphere	MIKHLLGDETSLELSEYAVAAALVAIGCVLAFTTLGTAIGSRINSLAATVNG
Ga0207651_103439783	3300025960	Switchgrass Rhizosphere	MLKNFFSDETGLELSEYAVAAALIAIAAAGVFTALGDSISTKITELSGHVASGK
Ga0207677_121758851	3300026023	Miscanthus Rhizosphere	MLKNFFNDETGLELSEYAVAAALIAIAAAGVFTALEDSISTKITELSG
Ga0207708_119049921	3300026075	Corn, Switchgrass And Miscanthus Rhizosphere	TVMLKNFFSDETGLDLSEYAVAAALIAIAAAGVFTALGDSISTKITELNGHVASGK
Ga0207674_101500341	3300026116	Corn Rhizosphere	FFNDETGLELSEYAVAAALIAIAAAGVFTALGDSISTKITELSGHVASGK
Ga0207675_1003130823	3300026118	Switchgrass Rhizosphere	MLKSFFTDQTGLELSEYAVAAALIAIAAAGVFTALGDAISLKVNELGTHISTGK
Ga0209236_11394661	3300026298	Grasslands Soil	MIKSFIFDESGLELSEYAVAAALVAIAVVGAFAALGTTISDKINELGTHISTGK
Ga0209472_11401093	3300026323	Soil	MITKFMLDETGLELSEYAVAAALVAVAVAGVFAALGNAIVGKISELTGHIAAGN
Ga0209590_101750464	3300027882	Vadose Zone Soil	MKKFLFDETGLELSEYAVAAALVAIAVVAAFTALGTAIGDKITTLGTTISK
Ga0209590_106672751	3300027882	Vadose Zone Soil	MTNSNKSMLKKFLQDETALELSEYAVAAALVAIAVAGVFMALGDTITTRINELSGHITAG
Ga0209486_100007221	3300027886	Agricultural Soil	ELSEYAVAAALVAIAVVGAFGLLGEAITGKIGELTDAIENDGAAPAAP
Ga0308183_10233382	3300030988	Soil	MINKFLHDETGLELSEYAVAAALVAIAVAGVFMALGDAITTKISELSGHISAGK
Ga0308196_10703691	3300030989	Soil	MIRKFFRDETGLELSEYSVAAALVAIAVVGAFGALGTTISTKIGEL
Ga0308197_102048441	3300031093	Soil	MLKNFFSDETGLELSEYAVAAALIAIAAAGVFTALGDSISTKITELGGHIASGK
Ga0308197_103788411	3300031093	Soil	MIKRFFCDETGLELSEYAVAAALVAIAVVGAFFTLGGTISTKINEL
Ga0308184_10209552	3300031095	Soil	MIKNFFRDETGLELSEYAVAAALVAIAVVGAFFTLGGTISNKIGELGTHISTGK
Ga0308151_10463882	3300031124	Soil	MIRKFFRDETGLELSEYAVAAALVAIAVVGAFSTLGSTISTKIGEL
Ga0299913_110206742	3300031229	Soil	MFKKFFTDESGLELSEYAVAAALVAIAVVGVFVALGEVIEGKITELGDVIETS
Ga0299913_110206743	3300031229	Soil	FFCDETGLELSEYAVAAALVAIAVVGAFIALGDAIGVKIDALADTIETGN
Ga0299913_113797392	3300031229	Soil	MIKKFFCDETGLELSEYAVAAALVAIAVVGAFAALGTTISEKITELGGHIETGQ
Ga0308179_10434532	3300031424	Soil	MIKKFFRDETGLELSEYAVAAALVAIAVVGAFTALVTAISGKITSLGTTISK
Ga0307468_1000545171	3300031740	Hardwood Forest Soil	KDETGLELSEYAVAAALVAIAAAGVFSALGDVIGVKINELGGHISTGK
Ga0334962_000005_92618_92776	3300034144	Sub-Biocrust Soil	MIKRFLQDETGLELSEYAVAAALVAVVTVGAFKLLGTTIGEKINELIAGINS
Ga0334932_000020_82848_83012	3300034174	Sub-Biocrust Soil	MIKNFLRDETGLELSEYAVAAALVAIAVVGAFGTLGTTISNKIGDLTGHIRDGK

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F096987

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences