Scaffold Ga0207710_10297919

Overview

Basic Information

• Taxon OID: 3300025900
• Scaffold ID: Ga0207710_10297919
• Source Dataset Name: Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 814
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: Michigan, USA
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016064	Metagenome / Metatranscriptome	250	Y
F016418	Metagenome / Metatranscriptome	247	Y
F096853	Metagenome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207710_102979192	F016064	AGG	MLSWCMANSDNLHETAEHRGYSLQLSCAPPQWQVLIGMVLKDRPALPPGKQIVKGWNEEETLKRAKTRIDLLIESLN
Ga0207710_102979193	F016418	AGCAGG	MSYRGYDLEQKTLMVGWQITITKDGKFVCNGSVAKSLAAAMDEAEKFVDCVLAECDGAAPRGRS
Ga0207710_102979194	F096853	GGAGG	MFSIGQTFEGMIGGVPRSAKVIAIVDGGRIGWLEFLDVKGPLFELDMAKKSVWKLVQG