Scaffold Ga0207710_10000889

Overview

Basic Information

• Taxon OID: 3300025900
• Scaffold ID: Ga0207710_10000889
• Source Dataset Name: Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 15992
• Total Scaffold Genes: 43
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 36 (83.72%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: Michigan, USA
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F103371	Metagenome	101	Y
F104712	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207710_1000088927	F103371	GAGG	MSYDDWKTHNPDDDRCEFCGAAPWESRGGWQPSGCNGECRISWRDPDAEYERMRDDHE
Ga0207710_100008899	F104712	N/A	VPTLVVEPIECMAAVLVGSGNELSLLKRNGNTITTNLDPSLGRLVRGKRYRVTFEEIESEEP