Scaffold Ga0207710_10000281

Overview

Basic Information

• Taxon OID: 3300025900
• Scaffold ID: Ga0207710_10000281
• Source Dataset Name: Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 41434
• Total Scaffold Genes: 38
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 23 (60.53%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: Michigan, USA
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003994	Metagenome	458	Y
F007997	Metagenome	341	Y
F065662	Metagenome	127	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207710_100002815	F065662	GAG	MAISNELSSDVAVAILAKKSSPQELQQLKEVILQVHSALQKMSEETRSDRLSRSSHKKAQKAQNEG
Ga0207710_100002816	F007997	N/A	MRSRIERKHVSFKLALAVACLCLSALSTFAADAPSRVMIKPEVSRSHREELIKRLRVITGWRNLTFDSNGALRLGDIPTTGGSESARLLLIEAVAGPNVIVLEDASARTDVAFCRVVRGRWVRDQLNMPPAYVVLIDFKDFQQLSGDAEARAAFDVGWGLLHELDHVVKDSDDARDAKTVGECEDHINRMRLEVGLPVRVDYFFSRAYLKADANFNARYVRLSFARQTKRYWLVWDATTVGGLHSDDQRALVR
Ga0207710_100002817	F003994	GAGG	MSQRRREREQNFLVQCSWCGSKIRDDKKEEANAVCLKCFYQILSNHLRAQKRTAYGEFVSDR