Scaffold Ga0207642_10000005

Overview

Basic Information

• Taxon OID: 3300025899
• Scaffold ID: Ga0207642_10000005
• Source Dataset Name: Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 401934
• Total Scaffold Genes: 417
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 282 (67.63%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan, Kellogg Biological Station
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003627	Metagenome / Metatranscriptome	476	Y
F005789	Metagenome / Metatranscriptome	390	Y
F064701	Metagenome / Metatranscriptome	128	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207642_10000005198	F003627	N/A	VDRETARAKMSAGLLAGGIVAAIFALCFVVAMLYVAS
Ga0207642_10000005249	F064701	AGG	MRLEEGRPGGVAPALVPIALGDPLRVGGGGIPSGRGRTLYYSMRHRTQLYLDEGQYRWLKQRAGEAGSIAAVVRELIDAERVRRLDPTEDPLLSYLVSESPGKGRERTSVTSLDRDLYGQ
Ga0207642_1000000587	F005789	GGA	MATAVGLDASPLNVLRSMRGRIVDARVAYPEVLHVEVKDSAGELWRLATQDAEWSPSDPAELVGRSVDDADIDGETGELRCKLSDGSLLDVKPAAREAEDDPPNWELITPSGVVLEFGPGVRWQIGSADSRASARA