Scaffold Ga0207692_10089686

Overview

Basic Information

• Taxon OID: 3300025898
• Scaffold ID: Ga0207692_10089686
• Source Dataset Name: Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1664
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan: Kellogg Biological Station
• Coordinates
  • Lat. (^o): 42.4774
  • Long. (^o): -85.451

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002788	Metagenome / Metatranscriptome	530	Y
F034301	Metagenome / Metatranscriptome	175	Y
F064022	Metagenome	129	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207692_100896861	F002788	GGAGG	MAFLLLVTWLGYVQPPSHYQVEFSSNEACEAARLQLIKDAERIRQSMIERATEQGRQIGGNNKTALLMAAISNAPYVSAVCVQKSTS
Ga0207692_100896863	F034301	N/A	MNEYDEYEVIDADTKRRLGRFNDLKSARSMAQTCANASGGKHQSIEIWGVVVTKTREQVETVTRTATEQRHQGEDYSEKEDRD
Ga0207692_100896864	F064022	N/A	ALLVMGFFVWNGRQRSERLALGLFIAGAVIVAVLVVVVASY