Metagenome Family F064022

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F064022
Family Type	Metagenome
Number of Sequences	129
Average Sequence Length	42 residues
Representative Sequence	ALLVIGFFVWNSRQRNERLAVGLFIAGAVIVVVLVVVVASH
Number of Associated Samples	82
Number of Associated Scaffolds	129

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	0.78 %
% of genes near scaffold ends (potentially truncated)	99.22 %
% of genes from short scaffolds (< 2000 bps)	95.35 %
Associated GOLD sequencing projects	75
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.58

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (51.938 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (39.535 % of family members)
Environment Ontology (ENVO)	Unclassified (58.915 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (51.163 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 52.17% β-sheet: 0.00% Coil/Unstructured: 47.83%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.58
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.58
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 129 Family Scaffolds
PF13557	Phenol_MetA_deg	3.10
PF13676	TIR_2	2.33
PF00816	Histone_HNS	2.33
PF13340	DUF4096	1.55
PF13701	DDE_Tnp_1_4	1.55
PF07045	DUF1330	1.55
PF09926	DUF2158	1.55
PF03781	FGE-sulfatase	0.78
PF13358	DDE_3	0.78
PF13751	DDE_Tnp_1_6	0.78
PF13403	Hint_2	0.78
PF01527	HTH_Tnp_1	0.78
PF13643	DUF4145	0.78
PF02371	Transposase_20	0.78
PF04392	ABC_sub_bind	0.78
PF00643	zf-B_box	0.78
PF13586	DDE_Tnp_1_2	0.78
PF13467	RHH_4	0.78

COG ID	Name	Functional Category	% Frequency in 129 Family Scaffolds
COG2916	DNA-binding protein H-NS	Transcription [K]	2.33
COG5470	Uncharacterized conserved protein, DUF1330 family	Function unknown [S]	1.55
COG1262	Formylglycine-generating enzyme, required for sulfatase activity, contains SUMF1/FGE domain	Posttranslational modification, protein turnover, chaperones [O]	0.78
COG2984	ABC-type uncharacterized transport system, periplasmic component	General function prediction only [R]	0.78
COG3547	Transposase	Mobilome: prophages, transposons [X]	0.78

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.94 %
All Organisms	root	All Organisms	48.06 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.94 %
cellular organisms	root	All Organisms → cellular organisms	48.06 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.94 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	48.06 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.94 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	36.43 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	1.55 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.94 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	35.66 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	1.55 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.94 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	15.50 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	13.95 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.55 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	0.78 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.94 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	14.73 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	12.40 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.55 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	0.78 %
Beijerinckiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae	0.78 %
Acetobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	0.78 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.94 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	14.73 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	6.98 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.55 %
unclassified Beijerinckiaceae	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → unclassified Beijerinckiaceae	0.78 %
Lichenicola	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Lichenicola	0.78 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	0.78 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.94 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	14.73 %
Bradyrhizobium erythrophlei	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	3.10 %
unclassified Bradyrhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium	1.55 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.55 %
Lichenicola cladoniae	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Lichenicola → Lichenicola cladoniae	0.78 %
Beijerinckiaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → unclassified Beijerinckiaceae → Beijerinckiaceae bacterium	0.78 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	0.78 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.94 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	14.73 %
Bradyrhizobium erythrophlei	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	3.10 %
Bradyrhizobium sp. A19	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. A19	1.55 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.55 %
Lichenicola cladoniae	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Lichenicola → Lichenicola cladoniae	0.78 %
Beijerinckiaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → unclassified Beijerinckiaceae → Beijerinckiaceae bacterium	0.78 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	0.78 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2189573005\|GZGK9D401APBQH	Not Available	502	Open in IMG/M
2228664021\|ICCgaii200_c1019328	Not Available	840	Open in IMG/M
3300004463\|Ga0063356_103693705	Not Available	659	Open in IMG/M
3300005165\|Ga0066869_10059283	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	693	Open in IMG/M
3300005173\|Ga0066822_1019484	Not Available	505	Open in IMG/M
3300005332\|Ga0066388_100162837	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2822	Open in IMG/M
3300005467\|Ga0070706_101247130	Not Available	682	Open in IMG/M
3300005471\|Ga0070698_100535973	Not Available	1109	Open in IMG/M
3300005764\|Ga0066903_100771944	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. A19	1712	Open in IMG/M
3300005764\|Ga0066903_101595155	Not Available	1237	Open in IMG/M
3300005764\|Ga0066903_102722482	Not Available	959	Open in IMG/M
3300005764\|Ga0066903_103372547	All Organisms → cellular organisms → Bacteria	862	Open in IMG/M
3300005764\|Ga0066903_103941495	All Organisms → cellular organisms → Bacteria	796	Open in IMG/M
3300005764\|Ga0066903_104894114	Not Available	711	Open in IMG/M
3300005764\|Ga0066903_104947307	Not Available	707	Open in IMG/M
3300005764\|Ga0066903_105025262	Not Available	701	Open in IMG/M
3300006173\|Ga0070716_100231380	All Organisms → cellular organisms → Bacteria	1248	Open in IMG/M
3300006175\|Ga0070712_100271687	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1362	Open in IMG/M
3300007076\|Ga0075435_101914060	Not Available	521	Open in IMG/M
3300009792\|Ga0126374_10210665	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. A19	1238	Open in IMG/M
3300010048\|Ga0126373_11092587	Not Available	863	Open in IMG/M
3300010048\|Ga0126373_11569830	Not Available	723	Open in IMG/M
3300010359\|Ga0126376_11331264	Not Available	740	Open in IMG/M
3300010361\|Ga0126378_10864487	Not Available	1012	Open in IMG/M
3300010361\|Ga0126378_13434455	Not Available	503	Open in IMG/M
3300010366\|Ga0126379_11611944	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	754	Open in IMG/M
3300010366\|Ga0126379_12373773	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	630	Open in IMG/M
3300010376\|Ga0126381_102257876	Not Available	782	Open in IMG/M
3300010376\|Ga0126381_103618993	Not Available	606	Open in IMG/M
3300010376\|Ga0126381_103757389	Not Available	593	Open in IMG/M
3300010398\|Ga0126383_13632524	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	504	Open in IMG/M
3300012202\|Ga0137363_11292007	All Organisms → cellular organisms → Bacteria	618	Open in IMG/M
3300012923\|Ga0137359_10585310	Not Available	980	Open in IMG/M
3300012948\|Ga0126375_10614951	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	832	Open in IMG/M
3300012957\|Ga0164303_10894877	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	621	Open in IMG/M
3300012971\|Ga0126369_10437327	Not Available	1354	Open in IMG/M
3300012971\|Ga0126369_11182123	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	854	Open in IMG/M
3300012971\|Ga0126369_11398165	Not Available	790	Open in IMG/M
3300016270\|Ga0182036_10997647	Not Available	690	Open in IMG/M
3300016270\|Ga0182036_11025076	Not Available	681	Open in IMG/M
3300016294\|Ga0182041_10301377	Not Available	1328	Open in IMG/M
3300016294\|Ga0182041_10316076	Not Available	1300	Open in IMG/M
3300016294\|Ga0182041_10338034	Not Available	1261	Open in IMG/M
3300016341\|Ga0182035_10337371	Not Available	1248	Open in IMG/M
3300016341\|Ga0182035_11919566	Not Available	537	Open in IMG/M
3300016357\|Ga0182032_10919905	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	744	Open in IMG/M
3300016357\|Ga0182032_11865122	All Organisms → cellular organisms → Bacteria	526	Open in IMG/M
3300016371\|Ga0182034_10624237	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	911	Open in IMG/M
3300016404\|Ga0182037_10515319	All Organisms → cellular organisms → Bacteria	1005	Open in IMG/M
3300020580\|Ga0210403_11071542	Not Available	627	Open in IMG/M
3300021168\|Ga0210406_10270988	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1388	Open in IMG/M
3300021168\|Ga0210406_11264474	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → unclassified Beijerinckiaceae → Beijerinckiaceae bacterium	533	Open in IMG/M
3300021444\|Ga0213878_10050429	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1623	Open in IMG/M
3300021560\|Ga0126371_10464710	All Organisms → cellular organisms → Bacteria	1412	Open in IMG/M
3300021560\|Ga0126371_11527705	Not Available	795	Open in IMG/M
3300021560\|Ga0126371_13813026	All Organisms → cellular organisms → Bacteria → Proteobacteria	508	Open in IMG/M
3300025898\|Ga0207692_10089686	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	1664	Open in IMG/M
3300025915\|Ga0207693_10374125	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1114	Open in IMG/M
3300026295\|Ga0209234_1043543	All Organisms → cellular organisms → Bacteria	1706	Open in IMG/M
3300027603\|Ga0209331_1066901	Not Available	898	Open in IMG/M
3300027903\|Ga0209488_10692479	All Organisms → cellular organisms → Bacteria	731	Open in IMG/M
3300031231\|Ga0170824_105122750	Not Available	622	Open in IMG/M
3300031543\|Ga0318516_10237084	Not Available	1055	Open in IMG/M
3300031545\|Ga0318541_10755868	Not Available	542	Open in IMG/M
3300031546\|Ga0318538_10737202	Not Available	535	Open in IMG/M
3300031573\|Ga0310915_10496577	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	867	Open in IMG/M
3300031573\|Ga0310915_10524777	Not Available	841	Open in IMG/M
3300031573\|Ga0310915_10919918	Not Available	612	Open in IMG/M
3300031668\|Ga0318542_10259352	Not Available	885	Open in IMG/M
3300031719\|Ga0306917_10641194	All Organisms → cellular organisms → Bacteria	835	Open in IMG/M
3300031744\|Ga0306918_10723771	Not Available	778	Open in IMG/M
3300031763\|Ga0318537_10085852	Not Available	1161	Open in IMG/M
3300031763\|Ga0318537_10252183	Not Available	655	Open in IMG/M
3300031768\|Ga0318509_10338780	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	842	Open in IMG/M
3300031768\|Ga0318509_10492253	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	685	Open in IMG/M
3300031768\|Ga0318509_10655224	Not Available	584	Open in IMG/M
3300031770\|Ga0318521_10299313	Not Available	946	Open in IMG/M
3300031771\|Ga0318546_10373897	Not Available	993	Open in IMG/M
3300031771\|Ga0318546_11067713	Not Available	568	Open in IMG/M
3300031781\|Ga0318547_10115030	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	1553	Open in IMG/M
3300031781\|Ga0318547_10902503	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	551	Open in IMG/M
3300031792\|Ga0318529_10213417	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	896	Open in IMG/M
3300031797\|Ga0318550_10096065	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1393	Open in IMG/M
3300031820\|Ga0307473_10865571	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	650	Open in IMG/M
3300031832\|Ga0318499_10245142	Not Available	696	Open in IMG/M
3300031833\|Ga0310917_10964674	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	572	Open in IMG/M
3300031835\|Ga0318517_10055752	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1666	Open in IMG/M
3300031835\|Ga0318517_10325126	Not Available	695	Open in IMG/M
3300031835\|Ga0318517_10431668	Not Available	595	Open in IMG/M
3300031879\|Ga0306919_10133141	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1793	Open in IMG/M
3300031879\|Ga0306919_10671861	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	798	Open in IMG/M
3300031890\|Ga0306925_10824510	All Organisms → cellular organisms → Bacteria	960	Open in IMG/M
3300031890\|Ga0306925_11681113	Not Available	613	Open in IMG/M
3300031894\|Ga0318522_10337628	Not Available	571	Open in IMG/M
3300031896\|Ga0318551_10139864	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1316	Open in IMG/M
3300031897\|Ga0318520_10180642	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1237	Open in IMG/M
3300031897\|Ga0318520_10736547	Not Available	617	Open in IMG/M
3300031897\|Ga0318520_10847630	Not Available	574	Open in IMG/M
3300031910\|Ga0306923_10760547	Not Available	1073	Open in IMG/M
3300031912\|Ga0306921_12425441	Not Available	546	Open in IMG/M
3300031942\|Ga0310916_10187469	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1725	Open in IMG/M
3300031946\|Ga0310910_10082136	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2351	Open in IMG/M
3300031946\|Ga0310910_11539428	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	509	Open in IMG/M
3300031947\|Ga0310909_10916012	Not Available	719	Open in IMG/M
3300031954\|Ga0306926_10187821	All Organisms → cellular organisms → Bacteria	2564	Open in IMG/M
3300031954\|Ga0306926_10598032	Not Available	1347	Open in IMG/M
3300032001\|Ga0306922_10123863	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2750	Open in IMG/M
3300032035\|Ga0310911_10903873	Not Available	509	Open in IMG/M
3300032039\|Ga0318559_10250891	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	818	Open in IMG/M
3300032039\|Ga0318559_10575647	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	525	Open in IMG/M
3300032055\|Ga0318575_10394796	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	702	Open in IMG/M
3300032063\|Ga0318504_10377075	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Lichenicola → Lichenicola cladoniae	675	Open in IMG/M
3300032064\|Ga0318510_10455670	Not Available	550	Open in IMG/M
3300032076\|Ga0306924_10309843	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1811	Open in IMG/M
3300032076\|Ga0306924_10393291	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	1587	Open in IMG/M
3300032076\|Ga0306924_11626320	Not Available	680	Open in IMG/M
3300032091\|Ga0318577_10135316	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1169	Open in IMG/M
3300032091\|Ga0318577_10536684	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	557	Open in IMG/M
3300032094\|Ga0318540_10206332	Not Available	947	Open in IMG/M
3300032094\|Ga0318540_10495023	Not Available	590	Open in IMG/M
3300032094\|Ga0318540_10626589	Not Available	518	Open in IMG/M
3300032174\|Ga0307470_10358722	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1014	Open in IMG/M
3300032261\|Ga0306920_101114197	Not Available	1144	Open in IMG/M
3300032261\|Ga0306920_101580928	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	933	Open in IMG/M
3300032261\|Ga0306920_101600913	Not Available	926	Open in IMG/M
3300033289\|Ga0310914_10073285	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	2887	Open in IMG/M
3300033289\|Ga0310914_10232987	All Organisms → cellular organisms → Bacteria	1651	Open in IMG/M
3300033289\|Ga0310914_11643241	Not Available	546	Open in IMG/M
3300033290\|Ga0318519_10052512	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2043	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	98.45%
Host-Associated	Host-Associated	1.55%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	98.45%
Plants	Host-Associated → Plants	1.55%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	98.45%
Rhizoplane	Host-Associated → Plants → Rhizoplane	0.78%
Rhizosphere	Host-Associated → Plants → Rhizosphere	0.78%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	86.05%
Loam	Environmental → Terrestrial → Soil → Loam	12.40%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	0.78%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	0.78%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	63.57%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	20.93%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	7.75%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	4.65%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	1.55%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	0.78%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	0.78%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	39.53%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	21.71%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	14.73%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	6.98%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	4.65%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	2.33%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.55%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	1.55%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.78%
Bulk Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Bulk Soil	0.78%
Grass Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grass Soil	0.78%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.78%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.78%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.78%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	0.78%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	0.78%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	0.78%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2189573005	Grass soil microbial communities from Rothamsted Park, UK - FG3 (Nitrogen)	Environmental	Open in IMG/M
2228664021	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300005165	Soil and rhizosphere microbial communities from Laval, Canada - mgHMC	Environmental	Open in IMG/M
3300005173	Soil and rhizosphere microbial communities from Laval, Canada - mgHMA	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005467	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG	Environmental	Open in IMG/M
3300005471	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006173	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300007076	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4	Host-Associated	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012923	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaG	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300012957	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MG	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300016357	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000	Environmental	Open in IMG/M
3300016371	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172	Environmental	Open in IMG/M
3300016404	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082	Environmental	Open in IMG/M
3300020580	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M	Environmental	Open in IMG/M
3300021168	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-M	Environmental	Open in IMG/M
3300021444	Vellozia epidendroides bulk soil microbial communities from rupestrian grasslands, the National Park of Serra do Cipo, Brazil - BS_R02	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300025898	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025915	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300026295	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 08_20_2013_1_20cm (SPAdes)	Environmental	Open in IMG/M
3300027603	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM3H0_M3 (SPAdes)	Environmental	Open in IMG/M
3300027903	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2 (SPAdes)	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031543	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20	Environmental	Open in IMG/M
3300031545	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f26	Environmental	Open in IMG/M
3300031546	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f23	Environmental	Open in IMG/M
3300031573	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111	Environmental	Open in IMG/M
3300031668	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f23	Environmental	Open in IMG/M
3300031719	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)	Environmental	Open in IMG/M
3300031744	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)	Environmental	Open in IMG/M
3300031763	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f29	Environmental	Open in IMG/M
3300031768	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f22	Environmental	Open in IMG/M
3300031770	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f17	Environmental	Open in IMG/M
3300031771	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f19	Environmental	Open in IMG/M
3300031781	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f20	Environmental	Open in IMG/M
3300031792	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f23	Environmental	Open in IMG/M
3300031797	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f23	Environmental	Open in IMG/M
3300031820	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_515	Environmental	Open in IMG/M
3300031832	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f25	Environmental	Open in IMG/M
3300031833	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF178	Environmental	Open in IMG/M
3300031835	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f21	Environmental	Open in IMG/M
3300031879	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031894	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f18	Environmental	Open in IMG/M
3300031896	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f19	Environmental	Open in IMG/M
3300031897	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f16	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300031942	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176	Environmental	Open in IMG/M
3300031946	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF172	Environmental	Open in IMG/M
3300031947	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.T000H	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300032001	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)	Environmental	Open in IMG/M
3300032035	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF170	Environmental	Open in IMG/M
3300032039	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f21	Environmental	Open in IMG/M
3300032055	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f23	Environmental	Open in IMG/M
3300032063	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f17	Environmental	Open in IMG/M
3300032064	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f17	Environmental	Open in IMG/M
3300032076	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)	Environmental	Open in IMG/M
3300032091	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f25	Environmental	Open in IMG/M
3300032094	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f25	Environmental	Open in IMG/M
3300032174	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300033289	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108	Environmental	Open in IMG/M
3300033290	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f15	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
FG3_10260900	2189573005	Grass Soil	LIVIIGGLTIALLVTGFLVWNSRQRNERLAIGLFIAGAVIVVVLVVVVSQ
ICCgaii200_10193281	2228664021	Soil	VMGFIVWNGRQKNDRLALGLFIAGAVIVLVLVVVVASH
Ga0063356_1036937052	3300004463	Arabidopsis Thaliana Rhizosphere	ALLVTGFFVWNNRQRNERLALGLFIAGAVIVLVLVVVVASQ*
Ga0066869_100592831	3300005165	Soil	GGLTIALLVTGFFVWNSRQRNELLAAGLFIAGALIVLVLVVVVASH*
Ga0066822_10194841	3300005173	Soil	LTIALLATGFLVWNSRQRNERLAIGLFIAGAVIVVVLVVVVGQ*
Ga0066388_1001628371	3300005332	Tropical Forest Soil	TIALFVTGFFVWNSRKRNERLAVGLFIAGAVIVVVLVVVVASH*
Ga0070706_1012471301	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	VIVGGLTIALLVTGFFVWNNRQRNERLALGLFIAGAVIVLVLVVVVASQ*
Ga0070698_1005359731	3300005471	Corn, Switchgrass And Miscanthus Rhizosphere	IALLVTGFFVWNSRQRNERLAVALFIAGAVIVVALLVVVVEASP*
Ga0066903_1007719441	3300005764	Tropical Forest Soil	VTGFFVWNSRKRNERLAVGLFIAGAVIVLVLVVVVASH*
Ga0066903_1015951551	3300005764	Tropical Forest Soil	GLTIALLVMGFIVGNSRQKNDRLALRLFIAGAVIVVVLAIVVVASN*
Ga0066903_1027224822	3300005764	Tropical Forest Soil	ALLVMGFIVGNSRQKNDRLALRLFIAGAVIVVVLAIVVVASN*
Ga0066903_1033725473	3300005764	Tropical Forest Soil	VTGFFVWNSRQKNERLAVGLFIAGAVIAVVLVVVVASH*
Ga0066903_1039414953	3300005764	Tropical Forest Soil	ALVVIGFFLWNSRQRNGRLAVGLFIAGAVIVVVLVVVVASH*
Ga0066903_1048941141	3300005764	Tropical Forest Soil	VIIGGLTIALFVTGFFVWNSRKRNERLAVGLFIAGAVIVAVLVVVVASH*
Ga0066903_1049473071	3300005764	Tropical Forest Soil	IIGGLTIALFVTGFFVWNSRKRNERLAVGLFIAGAVIVMVLVAVVVSQ*
Ga0066903_1050252621	3300005764	Tropical Forest Soil	GGLTVALLVMGFIVWNGRQRNDRLAVRLFIAGAVIVAVLAIVVVASA*
Ga0070716_1002313801	3300006173	Corn, Switchgrass And Miscanthus Rhizosphere	IALLVMGFFVWNGRQRNERLALGLFIAGAVIVVVLVVAVASY*
Ga0070712_1002716873	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	LALLVTGFFVWNNRQRNERLALGLFIAGAVIVLVLVVVVASQ*
Ga0075435_1019140601	3300007076	Populus Rhizosphere	VLALLVTGFFVWNNRQRNERLALGLFIAGAVIVLVLVVVVASQ*
Ga0126374_102106653	3300009792	Tropical Forest Soil	GFFVWHSRQKNERLAVGLFIAGAVIVVVLVVVVANH*
Ga0126373_110925871	3300010048	Tropical Forest Soil	GFFVWNSRKRNERLAVGLFITGAVIIAILVAVVVSH*
Ga0126373_115698301	3300010048	Tropical Forest Soil	IIGGLTIALFVTGFFVWNSRKRNERLAVGLFIAGAVIVAVLVVVVASH*
Ga0126376_113312641	3300010359	Tropical Forest Soil	TIALFVTGFFVWNSRKRNERLAVGLFITGAVIIAILVAVVVSH*
Ga0126378_108644872	3300010361	Tropical Forest Soil	VIIGGLTIALFVTGFFVWNSRKRNERLAVGLFIAGAVIVLVLVVVVANH*
Ga0126378_134344551	3300010361	Tropical Forest Soil	MGFFVWNGRQRNEQLALGLFIAGAVIVVVLAVVVVSSH*
Ga0126379_116119441	3300010366	Tropical Forest Soil	FFVWNSRQRNERLAVGLFIAGAVIIAVLVAVVVSQ*
Ga0126379_123737732	3300010366	Tropical Forest Soil	IIGGLAIALFVTGFFVWNSRQKNERLAVGLFILGAVIIAVLVAVVVSY*
Ga0126381_1022578761	3300010376	Tropical Forest Soil	LTIALLVMGFFVWNSRRRNERLAVGLFIAGAVIVVVLAIVVIASN*
Ga0126381_1036189933	3300010376	Tropical Forest Soil	GGLTIALMVMGFFVWNGRQRNEQLALGLFIAGAVIVVVLAIVVVASH*
Ga0126381_1037573891	3300010376	Tropical Forest Soil	FFVWNSRQRNERLAVGLFIAGAVIVVVLVVVVASH*
Ga0126383_136325243	3300010398	Tropical Forest Soil	IGGLTVALLVMGFIVWNGRQRNDRLAVRLFIAGAVIVAVLAIVVVASA*
Ga0137363_112920071	3300012202	Vadose Zone Soil	SVQTTAATSFFAWNSRQKNERLALGLFIAGAVIVAVLVVVVASY*
Ga0137359_105853102	3300012923	Vadose Zone Soil	ALLVIGFFVWNSRQRNERLAVGLFIAGAVIVVVLVVVVASH*
Ga0126375_106149511	3300012948	Tropical Forest Soil	TSFFIWNGRQKNERLAAGLFIGGLVIVGVLVAVVAGH*
Ga0164303_108948772	3300012957	Soil	LVTSFFIWNSRQKSERLAAGLFIGGLVIVVVLVAVVAGH*
Ga0126369_104373274	3300012971	Tropical Forest Soil	VIIGGLTIALFVTGFFVWNSRKRNERLAVGLFIAGAVIVAVLVVVVVSQ*
Ga0126369_111821233	3300012971	Tropical Forest Soil	GLTIALLVTGFFVWNGRQRNERLAVGLFIAGAVIIAVLVAVVVSP*
Ga0126369_113981652	3300012971	Tropical Forest Soil	LFVTVFFVWNSRKRNERLAVGLFIAGAVIVLVLVVVVTSH*
Ga0182036_109976472	3300016270	Soil	TGFFVWNSRQRNERLAVGLFMAGAVIIAVLVVVSP
Ga0182036_110250761	3300016270	Soil	TIALMVIGFFVWNSRQKNERLAVGLFIAGAVIIAVLVVVAVSNH
Ga0182041_103013773	3300016294	Soil	IGGLTIALVVIGFFVWNSRQKNERLAVGLFIAGAVIVVVLVVVVASY
Ga0182041_103160763	3300016294	Soil	TGFFVWNSRKRNEHLAVGLFIAGAVIVVVLVVVVASH
Ga0182041_103380341	3300016294	Soil	TSFFIWNSRQKNERMAVGLFIAGAVIVVVLVAVVASQ
Ga0182035_103373713	3300016341	Soil	GGLTIALFVTGFFVWNSRKRNERLAVGLFIAGAVIVVVLVVVVASY
Ga0182035_119195661	3300016341	Soil	LFVTGFFVWNSRQKNERLAVGLFIAGAVIVVVLVVVVASH
Ga0182032_109199051	3300016357	Soil	GLTIALVVIGFFVWNSRQRNEGLAAGLFIAGAVIIAVLVAVVVSH
Ga0182032_118651222	3300016357	Soil	ALVVIGFFVWNSRQKNERLAVGLFIAGAVIVVVLVVVVARTYLKIA
Ga0182034_106242371	3300016371	Soil	TIALVVIGFFVWNSRQKNERLAVGLFIVGAVIIAVLVAVVVSH
Ga0182037_105153191	3300016404	Soil	LLVTGFFVWNSRQKNERLAIGLFIVGTVIIAFLVV
Ga0210403_110715421	3300020580	Soil	GLTVALLVMGFIVWNGRQKNDRLALRLFIAGAVIVVVLAIVVVASH
Ga0210406_102709883	3300021168	Soil	IIGGLTIAFLVMGFLVLNSRQRNDRLAVRLFIAAAVIVAVLAIVVVASH
Ga0210406_112644741	3300021168	Soil	IALLVTGFFVWNSRQRNERLAIGLFISGAVIVVVLVVVVSQ
Ga0213878_100504291	3300021444	Bulk Soil	GLTIALFVTGFFVWNSRKRNERLAVGLFIAGAVIVVVLVVVVASH
Ga0126371_104647103	3300021560	Tropical Forest Soil	IIGGLTIALFVTGFFVWNSRKRNERLAVGLFIAGAVIVVVLAIVVIASN
Ga0126371_115277051	3300021560	Tropical Forest Soil	IALVVIGFFVWNSRQRNERLALGLFIAGAVIVVVLVVVVASH
Ga0126371_138130262	3300021560	Tropical Forest Soil	GFFVWNSRQRNERLAVGLFIAGAVIVVVLVVVVASH
Ga0207692_100896864	3300025898	Corn, Switchgrass And Miscanthus Rhizosphere	ALLVMGFFVWNGRQRSERLALGLFIAGAVIVAVLVVVVASY
Ga0207693_103741253	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	VALLVMGFFVWNGRQRNERLALGLFIAGAVIVVVLVVAVASY
Ga0209234_10435431	3300026295	Grasslands Soil	IGGLTVTLLVMGFFVWNSRQRNDRLALGLFIAGAVIVLVLVVVVAS
Ga0209331_10669013	3300027603	Forest Soil	LLAMSFFIWNSRQRDERMAIGLFIGGVVIVLVLVVIVSAY
Ga0209488_106924792	3300027903	Vadose Zone Soil	IALLVMGFFVWNRRQRDERLAFGLFIGGLVIVMVLVVVVANY
Ga0170824_1051227503	3300031231	Forest Soil	LLVTGFFVWNSRQKNERMAIGLFIAGAVIVLVLVVVVVSQ
Ga0318516_102370843	3300031543	Soil	AFFVWNSRQRNERLAVGLFIAGAVIVVVLVVVVAASH
Ga0318541_107558682	3300031545	Soil	TIALMVIGFFVWNSRQKNERLAVGLFIVGAVIIAVLVAVVVSH
Ga0318538_107372021	3300031546	Soil	IALFATGFFVWNSRKRNERLAVGLFIAGAVIVLVLVVVVASH
Ga0310915_104965771	3300031573	Soil	TGFFVWNSRKRNERLSVGLFIAGAVIIAVLVAVVVSQ
Ga0310915_105247771	3300031573	Soil	VIALLVTGFFVWNSRQRNERLALGLVIAGAVIVLVLVVMVASQ
Ga0310915_109199182	3300031573	Soil	LTIALFVTGFFVWNSRKRNERLAVGLFIAGAVIVVVLVVVVASH
Ga0318542_102593521	3300031668	Soil	GLTIALVVIGFFVWNSRQRNERLAVGLFIAGAVIVVVLVVVVANH
Ga0306917_106411942	3300031719	Soil	FVTGFFVWNSRKRNERLAVGLFIAGAIMIAVLVAVVVNH
Ga0306918_107237711	3300031744	Soil	LFVTGFFVWNSRQKNERLAVGLFIAGAIIVVVLVVVVASH
Ga0318537_100858523	3300031763	Soil	GGLTIALVVIGFFVWNSRQRNERLAVGLFIAGAVIVVVLVVVVANH
Ga0318537_102521832	3300031763	Soil	IIGGLTISLVVIGFFVWNSRQKNERLAVGLFIAGAVIVVVLVVVVASY
Ga0318509_103387801	3300031768	Soil	IIGGLTIALVVIGFFLWNSRQRNERLAVGLFIAGSVIVVVLVGVVVASH
Ga0318509_104922531	3300031768	Soil	LTIALFVTGFFVWNSRKRNERLSVGLFIAGAVIIAVLVAVVVSQ
Ga0318509_106552242	3300031768	Soil	TIALFVTGFFVWNSRKRNERLAVGLFIAGAVMIAVLVAVVVNH
Ga0318521_102993132	3300031770	Soil	FVTGFFVWNSRKRNERLAVGLFIAGAVMIAVLVAVVVNH
Ga0318546_103738971	3300031771	Soil	ALFVTGFFVWNSRKRNERLAVGLFIAGAVMIAVLVAVVVNH
Ga0318546_110677131	3300031771	Soil	VIVGGLTIALLVTGFFVWNNRQRNERLALGLFIAGAVIVLVLIVVVASQ
Ga0318547_101150305	3300031781	Soil	LTIALFVTGFFVWNSRKRNERLAVGLFIAGAVIIAVLVAVVVSY
Ga0318547_109025032	3300031781	Soil	IIGGLTIALFVIGFFVWNSRQRNERLAVGLFIAGGVIIAVLVAVVVSH
Ga0318529_102134173	3300031792	Soil	ALVVIGFFVWNSRQRNERLAVGLFIAGSVIVVVLVGVVVASH
Ga0318550_100960654	3300031797	Soil	GGLTIALVVIGFFVWNSRQRNERLAVGLFIAGSVIVVVLVGVVVASH
Ga0307473_108655713	3300031820	Hardwood Forest Soil	GFFVWNSRQRNERLAVGLFIAGAVIVVVLVVVVGSH
Ga0318499_102451422	3300031832	Soil	GLTIALLAMGFFVWNSRQRNDRLALQLFIAGAVIAVVLAIVVVASH
Ga0310917_109646741	3300031833	Soil	IALFVTGFFVWNSRQKNERLAVGLFILGAVIIAVLVAVVVSY
Ga0318517_100557521	3300031835	Soil	ALFVTGFFVWNSRKRNERLAVGLFIAGAVIIAVLVAVVVSH
Ga0318517_103251261	3300031835	Soil	VIIGGLTIALFVTGFFVWNSRKRNERLAVGLFIAGAVMIAVLVAVVVNH
Ga0318517_104316681	3300031835	Soil	TGFFVWNSRKRNERLAVGLFIAGAVMIAALVAVVVNH
Ga0306919_101331415	3300031879	Soil	FFVWNSRKRNERLAVGLFIAGAVMIAALVAVVVNH
Ga0306919_106718611	3300031879	Soil	TIALAVIGFFVWNSRQKNERLAVGLFIVGAVIIAVLVAVVVSH
Ga0306925_108245102	3300031890	Soil	TIALVVIGFFVWNSRQKNERLAVGLFIAGAVIVVVLVVVVARTYLKIA
Ga0306925_116811131	3300031890	Soil	TIALVVIGFFVWNSRQKNERLAVGLFIAGAVIVVVLVVVVASY
Ga0318522_103376282	3300031894	Soil	TIALFVTGFFVWNSRKRNERLAVGLFIAGAVIIAVLVAVVVSH
Ga0318551_101398643	3300031896	Soil	IALVVIGFFVWNSRQKNERLAVGLFIAGAVIVVVLVVVVASY
Ga0318520_101806421	3300031897	Soil	GLTIALVVIGFVVWNSRQKNERLAVGMFIAGAVIIAVLVAVVVSH
Ga0318520_107365472	3300031897	Soil	LVTGFFAWNSRQRNERLAVGLFIAGAVIVVVLVVAVASH
Ga0318520_108476302	3300031897	Soil	IIGGLTIALVVIGFFVWNSRQKNERLAVGLFIAGAVIVVVLVVVVASY
Ga0306923_107605473	3300031910	Soil	IGFFVWNSRQKNERLAVGLFIAAAVIIAVLVAVVVSP
Ga0306921_124254413	3300031912	Soil	FVTGFFVWNSRQKNERLAVGLFIAGAVIVVVLVVVVASH
Ga0310916_101874694	3300031942	Soil	ALFVTGFFVWNSRKRNERLAVGLFIAGAVMIAALVAVVVNH
Ga0310910_100821361	3300031946	Soil	GGLTIALVVIGFFVWNSRQKNERLAVGLFIVGAVIIAVLVAVVVSH
Ga0310910_115394281	3300031946	Soil	TIALFVIGFFVWNSRKRNERLAVGLFIAGAVIIAVLVAVVVSH
Ga0310909_109160122	3300031947	Soil	GFFVWNSRKRNEHLAVGLFIAGAVIVVVLVVVVASH
Ga0306926_101878214	3300031954	Soil	ALLVTGFFVWNSRKRNERLAVGLFIAGAVIIAVLIAVVVSH
Ga0306926_105980321	3300031954	Soil	ALMVTGFFVWNSRKRNEHLAVGLFIAGAVIVVVLVVVVASH
Ga0306922_101238631	3300032001	Soil	TGFFVWNSRKRNERLAVGLFIAGAIMIAVLVAVVVNH
Ga0310911_109038731	3300032035	Soil	LFVTGFFVWNSRKRNERLAVGLFIAGAVIVVVLVVVVASY
Ga0318559_102508913	3300032039	Soil	IGFFLWNSRQRNERLAVGLFIAGSVIVVVLVGVVVASH
Ga0318559_105756471	3300032039	Soil	ALFVTGFFVWNSRKRNERLAVGLFIAGAGIIAVLVAVVVSP
Ga0318575_103947962	3300032055	Soil	DGLTIALFVTGFFVWNSRKRNERLAVGLFIAGAVMIAALVAVVVNH
Ga0318504_103770751	3300032063	Soil	LTIALFVTGFFVWNSRKRNERLAVGLFIAGAVIIAVLVAVVVSH
Ga0318510_104556702	3300032064	Soil	ALMVIGFFVWNSRQRNERLAVGLFIAGAVIIAVLVAVVVSH
Ga0306924_103098431	3300032076	Soil	GLTIALVVIGFFVWNSRQRNERLAVGLFIAGAVMIAVLVVVVAVSNH
Ga0306924_103932911	3300032076	Soil	IALFVTGFFVWNSRKRNERLAVGLFIAGAVIIAVLVAVVVSY
Ga0306924_116263201	3300032076	Soil	TIALVVIGFFVWNGRQRNERLAVGLFIAGAVIIAVLVAVVVSQ
Ga0318577_101353161	3300032091	Soil	IALVVIGFFVWNSRQRNERLAVGLFIAGSVIVVVLVGVVVASH
Ga0318577_105366842	3300032091	Soil	FVTGFFVWNSRKRNERLAVGLFIAGAGIIAVLVAVVVSP
Ga0318540_102063321	3300032094	Soil	AMGFFVWNSRQRNDRLALQLFIAGAVIAVVLAIVVVASH
Ga0318540_104950232	3300032094	Soil	ALLVTGFFVWNNRQRNERLALGLFIAGAVIVLVLVVVVASQ
Ga0318540_106265891	3300032094	Soil	VIGFFVWNSRQKNERLAVGLFIVGAVIIAVLVAVVVSH
Ga0307470_103587223	3300032174	Hardwood Forest Soil	IALLVMGFFSRQKNDRLALRLFIAAAVIVVVLVVVVAGH
Ga0306920_1011141974	3300032261	Soil	IIGGLTIALVVIGFLVWNSRQKNERLAVGLFIAGAVIVVVLVVVVASH
Ga0306920_1015809283	3300032261	Soil	LLVTGFFVWNSRQRNERLAAGLFIAGAVIIAVLVAVVVSH
Ga0306920_1016009131	3300032261	Soil	FFVWNSRQRNERLAVGLFIAGAVIVVVLVVAVASH
Ga0310914_100732851	3300033289	Soil	IIGGLTIALFATGFFVWNSRKRNERLAVGLFIAGAVIVLVLVVVVASH
Ga0310914_102329873	3300033289	Soil	TIALFVMGFFVWNSRQRNERLAVGLFIAGGVIIAVLVAVVVSH
Ga0310914_116432411	3300033289	Soil	LTSFFIWNSRQKNERMAVGLFIAGAVIVVVLVAVVASQ
Ga0318519_100525124	3300033290	Soil	GLTIALVVIGFFVWNSRQRNERLAVGLFIAGAVIVVVLAIVVASH

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F064022

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences