Scaffold Ga0208916_10005428

Overview

Basic Information

• Taxon OID: 3300025896
• Scaffold ID: Ga0208916_10005428
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_0.19_<0.8_DNA (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5046
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (50.00%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (62.50%)
• Associated Families: 8

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.283
  • Long. (^o): -75.3633

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011918	Metagenome / Metatranscriptome	285	Y
F033721	Metagenome / Metatranscriptome	176	Y
F039993	Metagenome / Metatranscriptome	162	Y
F039994	Metagenome	162	N
F057984	Metagenome / Metatranscriptome	135	N
F091592	Metagenome	107	N
F098923	Metagenome	103	N
F102824	Metagenome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208916_1000542810	F102824	N/A	MTSVRVQREEGKWRVTTMAGNPIGPRLWGAVPPNGLPSIDDLFEDKAKAQDAADLWNAYSMWCQERSGKRKRR
Ga0208916_1000542812	F039993	N/A	MKIALSWLLYHIGDILNHNVLRYGYGYSLYNKIMLLSSDLDDKGVIWKDAK
Ga0208916_1000542814	F033721	GAG	MDAVKERIAKTMRWIRKELDEEGKPEWAVYIDKTGESNESEWSHFDTYKTRDDAVQACQRFTWEDYDCSDK
Ga0208916_1000542815	F039994	GGA	MENPPTIEEMGNAASEIVWRVMGNGSAKSAYGEWFWKDRPVFDYHITRCVKHAVTAQQQIHLNHPNPDESGENALDHLERAVVRALFAWMQLKKGLPRL
Ga0208916_1000542816	F011918	N/A	DCAQLWAYKYASENPKCACVSVVLAANDPETLVIHRWSEDELYEAGIAFQAMLKVWAWSKKYNPPGMKL
Ga0208916_100054285	F098923	AGGAG	MYYEEIDRRHVKALENILAEDKCEPGRLMGEDAGHLAWIMNQMLYDKFHGHGWELDLLTGRFIKTK
Ga0208916_100054288	F057984	GAGG	MDGLGQIKILAERKIEMIELDIEVDDKTRDIVCHAALREIISDGDALFNYGFNQAIKRFIQTKGKKCTKKSSSKKRLRR
Ga0208916_100054289	F091592	AGGA	LERLLHVVPGTQREAEAQMISAQFTRGDEDDRIKQLAGEVAIRAMQDIKLLQRRGVLDGLRLTKNRIGKLSDCNCYRDTKEVRSLVRDVKNGTVLFWCKVAGVRIDQATLNRVIKRGIGNVN