Scaffold Ga0208916

Basic Information
Taxon OID	3300025896 Open in IMG/M
Scaffold ID	Ga0208916_10001189 Open in IMG/M
Source Dataset Name	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_0.19_<0.8_DNA (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Ga0208916_10001189 Open in IMG/M

Source Dataset Name

Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_0.19_<0.8_DNA (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	11386
Total Scaffold Genes	20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	16 (80.00%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (83.33%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

11386

Total Scaffold Genes

20 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

16 (80.00%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (83.33%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location Name	USA: Delaware Bay
Coordinates	Lat. (^o)	39.283	Long. (^o)	-75.3633	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Delaware Bay

Coordinates

Lat. (^o)

39.283

Long. (^o)

-75.3633

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005528	Metagenome	397	Y
F006986	Metagenome	360	Y
F019319	Metagenome	230	N
F021759	Metagenome	217	N
F025023	Metagenome / Metatranscriptome	203	N
F040082	Metagenome	162	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208916_100011891	F040082	AGG	MTGDTFAMSQEIVELQTRVAELSVALERVTEQRDNAVDAAESLHTELEACRDRIKSLGGQLDRLRIHLQQGIEL
Ga0208916_1000118910	F006986	N/A	VTVVLVTWHDAHSGAESWINIKDLDTEPAEVQSVGFLLATTDGGKPDHITLYQSRNEDSVDHVLHIPVGMVKAIKVLMDLEINTSDR
Ga0208916_1000118911	F021759	AGAAGG	MDAGLATVLAAAVATFGGMVIAIMQLRGFRQENREDHAVVQKRLDNLIDMVGKQGAKLTSHLDWHLTTKEPSKDPKVKQVATRKKK
Ga0208916_100011893	F019319	GGAGG	MTKKDIQDAIAFLERQFVGVGEQDRLFEVIAALKQELDKRSKR
Ga0208916_100011895	F025023	AGAAGG	MTDTFEGRTYDTGVDRTCVLQLQTDFDTLRPHQRAMLKKIATECNEYGHSISLDQLKSHRRYQIGRGLVDLIMSDNCDELLITSLCHSIQGVLFKTAGGAIGHLDASCAEQFAVICRAIRWDEQDIVWNTSTDSFGFPSKEKVGK
Ga0208916_100011899	F005528	AGGA	MRILTAILATLTSLTISLGIAQAVSAPTHTSVAVIALQPLWQADRLDPIQPIRYRHGDVSWLPSLAKQAGWPDHTIDKLSQIVLRESGGCPNRRGGDMVDKDCNITGVSEWNHRSDTGLLQINGVNYDMSRNKWAAVCRQLNICTQDPLLDPLTNLKAGLVLYNLSGFEPWNPCNWRKCKVSTTSVP

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0208916_10001189

Overview

Ecosystem & Geography

Associated Families

Sequences