Scaffold Ga0208916_10000965

Overview

Basic Information

• Taxon OID: 3300025896
• Scaffold ID: Ga0208916_10000965
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_0.19_<0.8_DNA (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12636
• Total Scaffold Genes: 27
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 20 (74.07%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (77.78%)
• Associated Families: 9

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.283
  • Long. (^o): -75.3633

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005702	Metagenome	392	Y
F005846	Metagenome	388	Y
F007164	Metagenome / Metatranscriptome	356	Y
F011284	Metagenome	292	N
F014488	Metagenome	262	Y
F023833	Metagenome	208	Y
F024265	Metagenome	206	N
F025739	Metagenome / Metatranscriptome	200	Y
F100669	Metagenome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208916_100009651	F100669	AGCAGG	MTKVIRYLRKFLHKAQVRLKQAGSLIIGYLRKIGSIVRGINKLGDSYNAKCTQNRFR
Ga0208916_1000096513	F023833	AGGA	MKSHSDQLQDIINDAMSKAASLERERCAELVQRLSDGTEDQVIKEILNEVVTAIRRLSDE
Ga0208916_1000096518	F005702	GGA	VIIFLVAFFGLLILQGVRLFAKHIDQQNYERRKFYLYVAAELEKMDKIVADGNQPKQPELMLPNKNWVGRN
Ga0208916_1000096519	F005846	AGTAGG	VPASHNEFADNTAIEGKLNGWRGWFDQETQQGYNRHGKFATNHNLMAERILGAGIKSRFVDCEIMGQRTKTGKGTIVVMDAFDPSNPKPYAERMKEIEHLEAVTFDVPQNKLLRFVRLAHYKINSIWEEMNFQNNKAGEVVWEGFVMKAMDDGKYPFITNPNYCSPAWQKQRIRW
Ga0208916_100009652	F007164	N/A	MSEKQIGMELQKTVRLLDKAKQNAIEQMGEAIGLAADAGDILLSARVEGLDLDTIQEVAGINGEQARRYERVAKARPSLQAPTPGGLKQLALWTGLLPDPIETSNPKAEQAWHSYIIKARQWLARKTPAQWTPAQRTQFVEEARPIVEAYKEAGGEL
Ga0208916_1000096522	F011284	AGCAG	MTSQQSVEKATQKHFTKKHELHMTTLQMAAVESMEKKYKRGVEEHGGTKLWEMPAVRLVENAIEEATDQLTYLLTLRSQMHIVLELARDGCTDETLTNPRARECCNLIYTTLTGQTKPPL
Ga0208916_1000096524	F025739	GGTGG	VPRPAEKEMMNKLLTTAGFVTRKWILGYIVASLICGCATTRPYDIGEVPNQDSITDYIMRWDKLDRSKATPEEYRQLFGQTLKTISRLVEENERLRKRLDQ
Ga0208916_100009654	F014488	GGA	MNHHQGQDPADSILASYTPNMADHIDTLEDRVKERLAQMKAMNPSIDLDQLAKLTAEVVEQTIKHEGDSQMLRHRRDDTLDEALLALASNRSPDSLTSIAKRYINPSTGKPYTRAAISARLTELSQRTGLVLRIQRSERVRQIYKERALRVHKKRREECPKWNAEAWAKGIKKRGKKR
Ga0208916_100009656	F024265	N/A	MNESYVTAEAKAKGILSDRYPGKELEKLYATTRNQATIDMLRDAVFTLITNKIPTCTIAEVLKKTHGAIQYHLRYLEGRGKIKRPNKRCHWTEVKRED