Scaffold Ga0208916_10000828

Overview

Basic Information

• Taxon OID: 3300025896
• Scaffold ID: Ga0208916_10000828
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_0.19_<0.8_DNA (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 13932
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (65.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.283
  • Long. (^o): -75.3633

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004430	Metagenome / Metatranscriptome	438	Y
F043396	Metagenome	156	N
F056614	Metagenome	137	N
F097344	Metagenome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208916_1000082811	F056614	N/A	MTVFNPVWRVKIQSVEYTTYTLANLTITSGRNNIYQQAQAGYCNLELLNLTQAIVNININDSVTIELQDSTATYVPIFGGTVVDFGVEIITAGSVGINQVLKITALGALSRLPKALTDGTLVQDFDGDQIYHILQDLLLNNWGEVPAALQWANYDPTETWANAQNVGLGEIDQPGNYELAARSADRVDIYSLVAALATSGLGYIYEDSQGRISYADSTHRSVYLATYGYTELTANHALFNGLKIETRAGDVRNDITLKYGTNSNQEVSAEDINSINLYGRLAQAISTTVKHQADAQDQADFYLTLRAAPQANFTAITYQLTNPELDDGDRDSLINAFMGLPLRIIDLPPNMVAGTFQGFVEGWSFKAAYNEISITLNLSPLSFSLQAMSWEQVNIAESWNTISGSLTWETALVVA
Ga0208916_100008283	F043396	GGA	MGITKITLTKDEEIQAAAAAFICESKGVENYYFHDQTARGNIHESIRRTAEALGAEIAAARYFGITDFKLELDKFKIRADIGNRIEVKHTKWLDGHLILRERDRVEDLAVLVVGESPTYYVKGWIPIRAAKTSRFKHDKDGSFWVSQHNLNSMENLKESNYGQIEI
Ga0208916_100008285	F097344	GGAG	MFTILELAAVVIACSVGWFLVGWTIGYKQGVKDGWQRGRAAGLRWATDRVRNS
Ga0208916_100008289	F004430	AGG	MARADQVLTMLIPNGGWIATGEDYEGIEFLDCEPITKKQFIDGFAKYDDWKAKQDSDTASNKAALLTKLGITSEEAALLLS