Scaffold Ga0208644_1008825

Overview

Basic Information

• Taxon OID: 3300025889
• Scaffold ID: Ga0208644_1008825
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_18 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7067
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (29.41%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (16.67%)
• Associated Families: 6

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.12
  • Long. (^o): -75.25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010908	Metagenome / Metatranscriptome	297	Y
F011218	Metagenome / Metatranscriptome	293	N
F015723	Metagenome / Metatranscriptome	252	Y
F033779	Metagenome / Metatranscriptome	176	Y
F039112	Metagenome	164	Y
F093771	Metagenome / Metatranscriptome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208644_100882510	F011218	N/A	MQYYTNPAKRRKIDFLLAECASLFANCDSTYQARQEAKYKEQSILAEIAKIDYHFAIQCGYLQQDI
Ga0208644_100882512	F033779	N/A	MNGSMNLKKRKSLFVALTILSATLAGVSGCRTAQPILQSVIVKDTVIVTETKYLIDTLEVMKDTVIYQDKVRVQLQYIDRKVVVEATCLPDTIRITQTKIVAKQEPKVKKWTLESYLGALAFILTFAYLIKRWIDKLTE
Ga0208644_100882515	F093771	N/A	MTKESADSVITSWSLTGAGLLVGYIHQALGLLVLIASLAYTLWKWRRDWLKEKRND
Ga0208644_10088254	F010908	GAGG	MKQIFSPFQQLECFQVDGVDYICLDYQIIQDSEDNLVEWCSWFKFKRLSDHKHFLMPITKIIETKKEGRAKLCKCK
Ga0208644_10088257	F015723	N/A	MAKIVSITPKGQWQEFYKLDIRFDNGDFGTAFAKSPTPSYNVGDEVDYTKNEKGTIKINKPFGGGFSGGSGGSFANTSKVSGDERSASIIRQVALKAAVEYACAAGHDVNTILANAATFNEWMNGNQSTATHQEHFATRNESPF
Ga0208644_10088258	F039112	N/A	MTLSLSQETYTQALQVQQAHIQALQNKVQELEAKIQVLEQQSHLFI