Scaffold Ga0208644

Basic Information
Taxon OID	3300025889 Open in IMG/M
Scaffold ID	Ga0208644_1001293 Open in IMG/M
Source Dataset Name	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_18 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Ga0208644_1001293 Open in IMG/M

Source Dataset Name

Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_18 (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	21116
Total Scaffold Genes	27 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	11 (40.74%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (25.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

21116

Total Scaffold Genes

27 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

11 (40.74%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (25.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location Name	USA: Delaware Bay
Coordinates	Lat. (^o)	39.12	Long. (^o)	-75.25	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Delaware Bay

Coordinates

Lat. (^o)

39.12

Long. (^o)

-75.25

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F015724	Metagenome	252	Y
F047028	Metagenome	150	N
F080002	Metagenome	115	N
F085646	Metagenome	111	N

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0208644_100129315	F047028	GGA	MSNLSRGATALIKNLFGGNETERMISAGVVRTILSDITRLYFENRAARGEGILIFNPEEPENSKYLTKSDLENDLAVAQEGMDEKAEALFTKVIRVIEKESEADLALVAMVQSNEIAIHLIDPVEANKKVDELSNSLIL
Ga0208644_100129316	F085646	N/A	MDQTLKEIKSIREALTSIDISLQLLVSQKEGKVTSAFVSKKAISERLNIPSVAIDKLIHQGIASKGESGLVEGKHYCKADPAERNSSKFLYDPHAVMNAAWKNFSYV
Ga0208644_100129317	F080002	N/A	MVVTTYTSPAYSQNSSSELKRPCLWDEEFKIENLPSWIYTDNQPPSNHRECEAKISSLEYTIKDIELQIEIRELELKTGSSRHSNAFDYERWKVGALKAKQTHYYLLNAYSYWMIKNTPVVVDTSSKLDKLIALLIEDPADFETKASALLK
Ga0208644_10012935	F015724	N/A	MWTRWRRGYELYMYANQAYVGLNYSFRYWTTGTVGVGAALPGACYMYPSMSQDMAMRMVAIRPRDSFNFLDFGYSIKSVTQTSGTVYAIQLSSNFGPPISFFTGEILSDRFNADGTEKTSYNNYVVVGVGNGTTPLTPTFAPIFNSIFISLDTNNSWSVINNETLAAPAGLPTPGDYFTTEMRFGCNCPDYLAREDFNLYEYNLKRKYPYTLPQDMKPGSYDAGSDFLASRESNSRDLPGFTRDFGFLYVKRLLDLPTYTDGPKNYSDPNLIYFAPRWCKHIYASFWDMQNRFGSDALPPAWLAQPTDEPMDDRYREQFEINLVKQTTFEKRQQHLRWWEKYSPSKNTVPVHMMYPDMHPTMVKTLNFDTLASGTSTAMTASGFEMFTIDQYDPFAPPDPEITPKIDGGTYSNGALVSGAVLIYDGGQYSNGTLIPYPSYPSLINGGTY

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0208644_1001293

Overview

Ecosystem & Geography

Associated Families

Sequences