Scaffold Ga0207653_10000003

Overview

Basic Information

• Taxon OID: 3300025885
• Scaffold ID: Ga0207653_10000003
• Source Dataset Name: Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-1 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 268014
• Total Scaffold Genes: 254
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 203 (79.92%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan: Kellogg Biological Station
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007927	Metagenome / Metatranscriptome	342	Y
F008399	Metagenome / Metatranscriptome	334	Y
F014377	Metagenome / Metatranscriptome	263	N
F033157	Metagenome / Metatranscriptome	178	Y
F038224	Metagenome / Metatranscriptome	166	N
F055393	Metagenome / Metatranscriptome	138	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0207653_10000003100	F007927	N/A	MDMKVVTSERASAFIGERGGQVWVWLDPRRGLVGSFVWLEAHCEPPRSSRRSGFTRSSRRPHRFRALQSDGLTVHYDWGRLDPPDELHFDVKGWRKATRRLEAYWNGCVFAGDDVPPPRR
Ga0207653_10000003145	F008399	AGGGGG	MVRSLRSFRGAWRFPVLVAVGVMVASSCSSSSSAGGGAVTPNATIFVQNFRYNGVPTTLSSGIVTFLFENKESFPITHEMIPIALPQGKTSQDVTTAAQASGPTGGANSEDLWLHIGGDFGAADTGASVVETLYLPPGTYAFACWQTGTQSGGDNGPPHAAKGMVAQFTVT
Ga0207653_10000003149	F038224	GAGG	MSGAVLEVPADPRMGITLRAFVTAVANDLGAPAELVDDLALAVSELLASAIEGGSRRLRIELLKDGDGWTLRADGIGDIGSAPADLPYRRWDLLTGLFPSISVTAGKATIRSATAPS
Ga0207653_10000003182	F014377	AGGAGG	MNRILGDRTGRMRERLLSARLGNLDRQNERLRNEVSVLHSQLDHEREEHKDLRDALRSKPREVKVRKPGFVRVVLIGGGAYLLGAHAGRERYDEVLRWTRSMRDRMRGTAEDVAMQVDVGASKLEDRVEKKMADAELTSSRRTSQMPNTVRS
Ga0207653_10000003245	F033157	AGGGGG	VTDMRVLDVERRLERVERLLRAAADEARSARIDLGHEDGANQRWAAMMFAVLDQLDREGGEVSRRRFLEIGEEHAYNRRGMAGFYQQLVEPTPGLKTRLTARGRERLRFLRERYGA
Ga0207653_1000000353	F055393	AGAAGG	MPRDREGGVEESLEAREIRLSELADRKGYTLEKHGAGSPIGTLDYSLVEKETFSIVVDSHDGLDRVEVFLTDIPED