NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209097_10266724

Scaffold Ga0209097_10266724


Overview

Basic Information
Taxon OID3300025882 Open in IMG/M
Scaffold IDGa0209097_10266724 Open in IMG/M
Source Dataset NameActive sludge microbial communities of municipal wastewater-treating anaerobic digesters from USA - AD_UKC052_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)693
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Source Dataset Sampling Location
Location NameUSA
CoordinatesLat. (o)42.12Long. (o)-87.65Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F065813Metagenome / Metatranscriptome127N
F073596Metagenome / Metatranscriptome120N
F095525Metagenome / Metatranscriptome105Y

Sequences

Protein IDFamilyRBSSequence
Ga0209097_102667241F065813N/AMTPLISFFGWFDIIIATPFAIYFGYKGVKWIIGKLKNKQPQEKIETPDVE
Ga0209097_102667242F073596N/AMNVFEKIKLWFTSISKVVNFLINTYKDAEVLADKKANFKTWADFVIAFIKDALQYADEIAALAQSQPVQTKGQVIKAVKQDKKISANFQTAFFREKAQNFNK
Ga0209097_102667243F095525N/AMKPVTAIWLVALGLVVGVVVGQLLQYNKKRIENFINKLKKK
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