Scaffold Ga0209534_10068241

Overview

Basic Information

• Taxon OID: 3300025880
• Scaffold ID: Ga0209534_10068241
• Source Dataset Name: Pelagic Microbial community sample from North Sea - COGITO 998_met_07 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2161
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Helgoland, sampling site Kabeltonne
• Coordinates
  • Lat. (^o): 54.184167
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F046974	Metagenome / Metatranscriptome	150	N
F048584	Metagenome	148	N
F055202	Metagenome / Metatranscriptome	139	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209534_100682413	F055202	GAGG	MTRRQAKQIRQQVRAILTQVGLGLAAGLIIGAVLALNL
Ga0209534_100682414	F048584	AGGAG	MQDYDLTQYCNDIAEEIARDASDIEQATDWAHERADGSEYVIYYAKAHALCQNCNIEQGEDFFSECYGGEHGKSYDDIACIMAYGEINARICARLWQIFEEREEDAA
Ga0209534_100682417	F046974	GGAG	MAGKALQKRILSDVTKQGGAEYLFEYFSSGGTMAQLATHYECSRGYVSTALHKVPEYTAVINKARQEAADALVEQGLEMVDALDGGSSTQEIAATREKVQWRKFMA