Scaffold Ga0209533_1035305

Overview

Basic Information

• Taxon OID: 3300025874
• Scaffold ID: Ga0209533_1035305
• Source Dataset Name: Pelagic Microbial community sample from North Sea - COGITO 998_met_04 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3190
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Helgoland, sampling site Kabeltonne
• Coordinates
  • Lat. (^o): 54.184167
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F079229	Metagenome	116	Y
F081777	Metagenome	114	N
F092731	Metagenome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209533_10353055	F081777	AGGAG	MKDYTHKRLQASCEVRKQERLDKYLSIGLSVLGASIGVFCIIYATHVALN
Ga0209533_10353056	F079229	AGG	MSTLLTKLDDVQYDFNFQFAIALSDPELVVASLSDHGVLITIAKANELIVNLRKGNASHA
Ga0209533_10353058	F092731	GAGG	MKTKTIELSTKATTVYNTLLELNWSEPYLTLEHIQAATGLGRSKLAPTLAELIGASKVLHGNEEALGELIETFTPKVKGIAYGYPLDYYTFDEWIENKLDIN