Scaffold Ga0209533

Basic Information
Taxon OID	3300025874 Open in IMG/M
Scaffold ID	Ga0209533_1000794 Open in IMG/M
Source Dataset Name	Pelagic Microbial community sample from North Sea - COGITO 998_met_04 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300025874 Open in IMG/M

Scaffold ID

Ga0209533_1000794 Open in IMG/M

Source Dataset Name

Pelagic Microbial community sample from North Sea - COGITO 998_met_04 (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	30062
Total Scaffold Genes	56 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	24 (42.86%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (28.57%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

30062

Total Scaffold Genes

56 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

24 (42.86%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (28.57%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location Name	Helgoland, sampling site Kabeltonne
Coordinates	Lat. (^o)	54.184167	Long. (^o)	7.9	Alt. (m)	Depth (m)	1
Location on Map

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Source Dataset Sampling Location

Location Name

Helgoland, sampling site Kabeltonne

Coordinates

Lat. (^o)

54.184167

Long. (^o)

7.9

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F005430	Metagenome / Metatranscriptome	401	Y
F012872	Metagenome / Metatranscriptome	276	Y
F014505	Metagenome / Metatranscriptome	262	Y
F016957	Metagenome / Metatranscriptome	243	N
F030884	Metagenome / Metatranscriptome	184	Y
F053302	Metagenome / Metatranscriptome	141	Y
F084220	Metagenome / Metatranscriptome	112	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209533_100079414	F030884	N/A	MIVLHPNTTQYNNLNGYRYKSSELLFVKDGNDNWIVGTAVLNDSAFAAIHDQLNQLERITYVPVPEPEL
Ga0209533_100079415	F005430	GAG	MITRKYEFIDEAAADAAIDILRDEEGNLTENVVKLGYLVTTPATYDEEGNELTIVSEKYAVDVHWSNRPNQDWQQYLVWVTPMGIHSFGSSSSRDEYALAYCILYPNSTYCNPPDEEDTE
Ga0209533_100079431	F012872	GGA	MDLHFEGNRLYYMEKEAELFRALDHLSKELSDQKTMTKEDMWEVFHILADSAAVYRHITDYFNTLDKLILDARIENGKLKQEMYDIKKENHRLSEMLNREMDGF
Ga0209533_100079435	F014505	N/A	MGRIETFYRKNFKRLTGFIKEYTDGSYEIASDIVQMVFLRLLELESEGRTNFYEEDSLNFFYVYRSCINTAFKYQRAKKKINKVSLEELHFDYHEDQPYPEEKAALEKLISYMEDEMKELHWYDEKMIRIHMEGTSMNQIHRETDIGLTSIKNTIKNGKAKIQERLQEDWEDFQNGDYDK
Ga0209533_100079437	F016957	N/A	MQLRKYLKEGRKLSDDRTAICVDVGKSGEALFKELTGAHKSSLADDKKHIDFYWGDMKVDVKGLKKMHHSGYILLEFINVWGGHGWCSRKSKAEYIAFQFPDAFYIFRKNHLRRRALDLCEEFDRSKILRKNWIPYQEAMYKWVGRYNAQDVFTYLKMEDVEDLIFEILPYKIVEK
Ga0209533_10007944	F053302	N/A	MNLGFIIEQLQKSEAIDQDMMIAKGEWKIITKWSEAKEQIRWQSRKK
Ga0209533_100079454	F084220	N/A	MGYLDWELESYQYYHDSTCSVCGESQDPDYYDCRCEEEEDEHLGI

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209533_1000794

Overview

Ecosystem & Geography

Associated Families

Sequences