NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209603_1016932

Scaffold Ga0209603_1016932


Overview

Basic Information
Taxon OID3300025849 Open in IMG/M
Scaffold IDGa0209603_1016932 Open in IMG/M
Source Dataset NamePelagic marine microbial communities from North Sea - COGITO_mtgs_120607 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4787
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families6

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameGermany:Helgoland, sampling site Kabeltonne, North Sea
CoordinatesLat. (o)54.1883Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005129Metagenome / Metatranscriptome411Y
F037230Metagenome / Metatranscriptome168Y
F045851Metagenome / Metatranscriptome152Y
F056896Metagenome / Metatranscriptome137N
F072257Metagenome / Metatranscriptome121Y
F092077Metagenome / Metatranscriptome107N

Sequences

Protein IDFamilyRBSSequence
Ga0209603_10169321F005129N/AMKYKVKIAEVNKSTNLMHHSYIDLGIFTVNATTHSFLFPAVKTDWGADINDTELEFHVNNKRCKYVGFKELYTQLYGNSFVTWEADIIQQIEEEVAKQIVKEYPGTNVNY
Ga0209603_101693213F045851N/AMTLQDHNTINELIKFYQKNRNESDYKKGIQPIDGHKIDKLMMSNHLMGAKLDLNIY
Ga0209603_10169322F072257N/AMQELDKVVHQWCDSNDRWMYIEYDRDGKVMGLNFMQGDEYECFKKSWCVSDRGLTDFYKQMLYTFAYEQRTTSEHQFINKCMWAYHSAISSRDEYAEEKTTHDYLKMCRQKTTTIR
Ga0209603_10169323F092077N/AMKELSPLQRSFERINELMPDNKDVLLRCSLYEMCFELTNQSFAEGINTKY
Ga0209603_10169326F037230N/AMKNLTEEYVEIDWTGICSDFDLDHGDITPEQSFEMDRALGNINEVLHKFIEQNKSEVHLGQATLTNTEYNVLMVSLDHMYEHLDDMRGDFDGDEDNEIDNLKRIADVRSLQKLFKK
Ga0209603_10169327F056896N/AMWSNCCGAEASYLSDELCGDCLEHAVFDDEDEDMGDTCRNGKEWNKCKCC
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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