Scaffold Ga0209603_1000908

Overview

Basic Information

• Taxon OID: 3300025849
• Scaffold ID: Ga0209603_1000908
• Source Dataset Name: Pelagic marine microbial communities from North Sea - COGITO_mtgs_120607 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 33167
• Total Scaffold Genes: 53
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (18.87%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (25.00%)
• Associated Families: 8

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Germany:Helgoland, sampling site Kabeltonne, North Sea
• Coordinates
  • Lat. (^o): 54.1883
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020903	Metagenome / Metatranscriptome	221	N
F029278	Metagenome / Metatranscriptome	189	N
F038672	Metagenome	165	N
F043411	Metagenome / Metatranscriptome	156	N
F056150	Metagenome	138	N
F073424	Metagenome / Metatranscriptome	120	N
F080238	Metagenome / Metatranscriptome	115	Y
F081203	Metagenome / Metatranscriptome	114	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209603_100090811	F043411	N/A	MKKMEWMKMKKFKDKMLKRRLTYNNKRVYIKSLDSKLAIVSHTEEGNYKQFKVNIEDLVEFK
Ga0209603_100090812	F073424	GAG	MKLTDKEIKEQKAKFGSKAVNYFVRFMEARRKWRRLPDYFIKQVIENSDKL
Ga0209603_100090816	F029278	N/A	MEITIPTKWSDVTIGNYINLRPVLNSELNPIERVINILAVLTGQKRDVIKNISLDQFKSIKKKMSFLETELPNKLTKRRFKIGGQWYEFKVDAKKLLFGEYINSMEILQNAKEDEEAIFNNLHHILTTICRPVKKTLFGWKHIKVDSEILRKTADNFLNNMPMTIAYPIGVFFYTHSEDLTKAIKTSLMVEAERIAREAKQELDLVRDGDGGTP
Ga0209603_100090817	F020903	N/A	MTDQLDIFSFDESQLEEVKIDNPTTLTQVFNNIAADMVYCLKQSVIKEGLVFRGGLEQSIKMPIKMFGNRMTAILYLADYYDYLNKGVKGIGGQKNVYETVTSKSGRRYRKPVKDNSGNILKEAWKIKAPESPYQFKKGPKVSHVKEWSKSKGLNEYAVRNSIAHTGIKPRYFFDNCMEQTFYGSAFNKFKTDIRIVAGERIAKGLKEIIKK
Ga0209603_100090819	F080238	N/A	MEEKLTEFEKMLKELENKPVPERTCNIDDENCESCSG
Ga0209603_100090838	F081203	GGA	MDKYEFYYRQRQEWEYWQATERHNFLSDRLLGVLTQAKWNRDILKTLKLSDNDLEIHRNRFSQMITQVVKISLELKELAINYNPKRIKQIIIILTKIKNYNNETIKNS
Ga0209603_100090847	F038672	N/A	MDELDVMLRKNKLDIMIIKASADIEKTNNKLKKEGLETLVDILDLIHDLQHEIRQNYRDISKLKYENAVAYKENAILKTDFSTYKHNLKQAELKSTKNV
Ga0209603_100090851	F056150	N/A	MDRKLIKKIENFIFWIGREYNVVELEDFKQDIFIILLNKGEDFIIQLDKENSIKKYVYKLCLYQIISERGQYRTKYYLPSQFSSIEDIETYSNSCFKDQVLKDLINSLQGLDRIMMEQLLICSGNRNCLAEKSDIHRNTIQYKFKELANKIKQKWTLNEFYS