NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209182_10204302

Scaffold Ga0209182_10204302


Overview

Basic Information
Taxon OID3300025843 Open in IMG/M
Scaffold IDGa0209182_10204302 Open in IMG/M
Source Dataset NameLake sediment microbial communities from Lake Baikal, Russia to study Microbial Dark Matter (Phase II) - Lake Baikal sediment 0-5 cm (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)554
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Sediment → Lake Sediment → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location NameRussia: Lake Baikal
CoordinatesLat. (o)53.7598Long. (o)107.9791Alt. (m)Depth (m)0 to .05
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F019319Metagenome230N

Sequences

Protein IDFamilyRBSSequence
Ga0209182_102043022F019319GGAGGMTKKDIQDAIAFLQKMFVGVGDQDRLFEVIAALKEELARRNKR

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